Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0766 and SO0766.1 are separated by 165 nucleotides SO0766.1 and SO0767 are separated by 58 nucleotides SO0767 and SO0768 are separated by 137 nucleotides SO0768 and argR are separated by 113 nucleotides
SO0766: SO0766 - transcriptional regulator, AraC/XylS family (NCBI ptt file), at 779,788 to 780,609
SO0766
SO0766.1: SO0766.1 - conserved hypothetical protein (NCBI ptt file), at 780,775 to 781,344
SO0766.1
SO0767: SO0767 - transcriptional regulator, LysR family (NCBI ptt file), at 781,403 to 781,819
SO0767
SO0768: SO0768 - Putative NADH-flavin reductase (NCBI ptt file), at 781,957 to 782,589
SO0768
SO0769: argR - arginine repressor (NCBI ptt file), at 782,703 to 783,173
argR
Position (kb) 781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 780.412 kb on - strand, within SO0766 at 780.432 kb on - strand, within SO0766 at 780.443 kb on + strand, within SO0766 at 780.446 kb on - strand, within SO0766 at 780.451 kb on - strand, within SO0766 at 780.488 kb on + strand, within SO0766 at 780.575 kb on - strand at 780.575 kb on - strand at 780.613 kb on + strand at 780.624 kb on - strand at 780.674 kb on + strand at 780.674 kb on + strand at 780.682 kb on - strand at 780.682 kb on - strand at 780.742 kb on - strand at 780.808 kb on - strand at 780.815 kb on - strand at 780.827 kb on - strand at 780.899 kb on - strand, within SO0766.1 at 781.063 kb on - strand, within SO0766.1 at 781.078 kb on - strand, within SO0766.1 at 781.078 kb on - strand, within SO0766.1 at 781.078 kb on - strand, within SO0766.1 at 781.078 kb on - strand, within SO0766.1 at 781.214 kb on + strand, within SO0766.1 at 781.222 kb on + strand, within SO0766.1 at 781.284 kb on + strand, within SO0766.1 at 781.284 kb on + strand at 781.292 kb on - strand at 781.292 kb on - strand at 781.295 kb on + strand at 781.325 kb on - strand at 781.328 kb on + strand at 781.336 kb on - strand at 781.378 kb on + strand at 781.523 kb on + strand, within SO0767 at 781.531 kb on - strand, within SO0767 at 781.533 kb on + strand, within SO0767 at 781.661 kb on + strand, within SO0767 at 781.674 kb on - strand, within SO0767 at 781.872 kb on - strand at 781.969 kb on + strand at 781.970 kb on + strand at 782.014 kb on + strand at 782.022 kb on - strand, within SO0768 at 782.042 kb on + strand, within SO0768 at 782.078 kb on + strand, within SO0768 at 782.078 kb on + strand, within SO0768 at 782.088 kb on + strand, within SO0768 at 782.088 kb on + strand, within SO0768 at 782.093 kb on + strand, within SO0768 at 782.101 kb on - strand, within SO0768 at 782.119 kb on + strand, within SO0768 at 782.218 kb on + strand, within SO0768 at 782.326 kb on + strand, within SO0768 at 782.347 kb on + strand, within SO0768 at 782.361 kb on + strand, within SO0768 at 782.446 kb on + strand, within SO0768 at 782.446 kb on + strand, within SO0768 at 782.447 kb on + strand, within SO0768 at 782.448 kb on - strand, within SO0768 at 782.454 kb on - strand, within SO0768 at 782.454 kb on - strand, within SO0768 at 782.454 kb on - strand, within SO0768 at 782.520 kb on + strand, within SO0768 at 782.550 kb on - strand at 782.590 kb on + strand at 782.590 kb on + strand at 782.597 kb on + strand at 782.598 kb on - strand at 782.598 kb on - strand at 782.644 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 780,412 - SO0766 0.76 -2.4 780,432 - SO0766 0.78 +0.1 780,443 + SO0766 0.80 -1.1 780,446 - SO0766 0.80 +1.9 780,451 - SO0766 0.81 -0.7 780,488 + SO0766 0.85 -0.1 780,575 - -2.9 780,575 - -2.3 780,613 + +2.0 780,624 - -1.5 780,674 + +0.1 780,674 + +0.9 780,682 - +0.2 780,682 - +1.9 780,742 - +0.9 780,808 - -1.5 780,815 - -0.3 780,827 - -1.1 780,899 - SO0766.1 0.22 -0.3 781,063 - SO0766.1 0.51 -1.6 781,078 - SO0766.1 0.53 +0.0 781,078 - SO0766.1 0.53 +0.1 781,078 - SO0766.1 0.53 -2.8 781,078 - SO0766.1 0.53 -0.2 781,214 + SO0766.1 0.77 +0.9 781,222 + SO0766.1 0.78 -2.4 781,284 + SO0766.1 0.89 +0.4 781,284 + -0.7 781,292 - -2.1 781,292 - +0.1 781,295 + +1.0 781,325 - -0.3 781,328 + -1.3 781,336 - -0.6 781,378 + +0.1 781,523 + SO0767 0.29 -1.1 781,531 - SO0767 0.31 -0.1 781,533 + SO0767 0.31 +1.0 781,661 + SO0767 0.62 -1.0 781,674 - SO0767 0.65 -1.1 781,872 - -0.7 781,969 + +0.7 781,970 + +0.2 782,014 + -1.8 782,022 - SO0768 0.10 -1.7 782,042 + SO0768 0.13 -0.4 782,078 + SO0768 0.19 +0.7 782,078 + SO0768 0.19 -0.2 782,088 + SO0768 0.21 -0.2 782,088 + SO0768 0.21 +1.2 782,093 + SO0768 0.21 +0.7 782,101 - SO0768 0.23 +1.9 782,119 + SO0768 0.26 +1.0 782,218 + SO0768 0.41 +1.8 782,326 + SO0768 0.58 -1.5 782,347 + SO0768 0.62 -1.5 782,361 + SO0768 0.64 +1.0 782,446 + SO0768 0.77 +5.4 782,446 + SO0768 0.77 +0.8 782,447 + SO0768 0.77 -2.8 782,448 - SO0768 0.78 +3.1 782,454 - SO0768 0.79 +1.4 782,454 - SO0768 0.79 +1.3 782,454 - SO0768 0.79 -0.1 782,520 + SO0768 0.89 +0.4 782,550 - -0.2 782,590 + +0.7 782,590 + -1.6 782,597 + +0.8 782,598 - +0.7 782,598 - +1.1 782,644 + +0.3
Or see this region's nucleotide sequence