Strain Fitness in Shewanella oneidensis MR-1 around SO0764

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0762 and SO0763 are separated by 376 nucleotidesSO0763 and SO0764 overlap by 14 nucleotidesSO0764 and SO0765 are separated by 128 nucleotidesSO0765 and SO0766 are separated by 102 nucleotides SO0762: SO0762 - isochorismatase family protein (NCBI ptt file), at 776,916 to 777,458 SO0762 SO0763: SO0763 - hypothetical protein (NCBI ptt file), at 777,835 to 778,056 SO0763 SO0764: SO0764 - hypothetical protein (NCBI ptt file), at 778,043 to 778,852 SO0764 SO0765: SO0765 - threonine efflux protein, putative (NCBI ptt file), at 778,981 to 779,685 SO0765 SO0766: SO0766 - transcriptional regulator, AraC/XylS family (NCBI ptt file), at 779,788 to 780,609 SO0766 Position (kb) 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 777.053 kb on + strand, within SO0762at 777.063 kb on + strand, within SO0762at 777.156 kb on + strand, within SO0762at 777.174 kb on - strand, within SO0762at 777.319 kb on + strand, within SO0762at 777.369 kb on + strand, within SO0762at 777.384 kb on - strand, within SO0762at 777.408 kb on + strandat 777.468 kb on + strandat 777.497 kb on + strandat 777.497 kb on + strandat 777.497 kb on + strandat 777.497 kb on + strandat 777.505 kb on - strandat 777.505 kb on - strandat 777.505 kb on - strandat 777.505 kb on - strandat 777.517 kb on - strandat 777.533 kb on - strandat 777.540 kb on + strandat 777.556 kb on + strandat 777.556 kb on + strandat 777.556 kb on + strandat 777.617 kb on - strandat 777.619 kb on - strandat 777.667 kb on - strandat 777.927 kb on - strand, within SO0763at 777.927 kb on - strand, within SO0763at 777.963 kb on + strand, within SO0763at 777.963 kb on + strand, within SO0763at 777.963 kb on + strand, within SO0763at 777.971 kb on - strand, within SO0763at 777.971 kb on - strand, within SO0763at 777.971 kb on - strand, within SO0763at 777.983 kb on - strand, within SO0763at 778.021 kb on + strand, within SO0763at 778.022 kb on + strand, within SO0763at 778.030 kb on - strand, within SO0763at 778.030 kb on - strand, within SO0763at 778.050 kb on + strandat 778.058 kb on - strandat 778.106 kb on + strandat 778.120 kb on + strandat 778.140 kb on - strand, within SO0764at 778.158 kb on - strand, within SO0764at 778.233 kb on + strand, within SO0764at 778.268 kb on - strand, within SO0764at 778.275 kb on + strand, within SO0764at 778.342 kb on + strand, within SO0764at 778.342 kb on + strand, within SO0764at 778.350 kb on - strand, within SO0764at 778.423 kb on + strand, within SO0764at 778.423 kb on + strand, within SO0764at 778.515 kb on - strand, within SO0764at 778.533 kb on + strand, within SO0764at 778.533 kb on + strand, within SO0764at 778.541 kb on - strand, within SO0764at 778.541 kb on - strand, within SO0764at 778.541 kb on - strand, within SO0764at 778.541 kb on - strand, within SO0764at 778.686 kb on - strand, within SO0764at 778.958 kb on + strandat 778.958 kb on + strandat 778.958 kb on + strandat 778.968 kb on + strandat 778.978 kb on + strandat 778.986 kb on - strandat 779.013 kb on - strandat 779.021 kb on - strandat 779.058 kb on + strand, within SO0765at 779.066 kb on - strand, within SO0765at 779.108 kb on - strand, within SO0765at 779.163 kb on + strand, within SO0765at 779.183 kb on - strand, within SO0765at 779.206 kb on - strand, within SO0765at 779.360 kb on + strand, within SO0765at 779.366 kb on + strand, within SO0765at 779.386 kb on - strand, within SO0765at 779.563 kb on + strand, within SO0765at 779.583 kb on + strand, within SO0765at 779.583 kb on + strand, within SO0765at 779.591 kb on - strand, within SO0765at 779.591 kb on - strand, within SO0765at 779.663 kb on - strandat 779.663 kb on - strandat 779.696 kb on - strandat 779.734 kb on + strandat 779.734 kb on + strandat 779.774 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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777,053 + SO0762 0.25 -1.7
777,063 + SO0762 0.27 -1.1
777,156 + SO0762 0.44 -0.1
777,174 - SO0762 0.48 -0.2
777,319 + SO0762 0.74 -0.1
777,369 + SO0762 0.83 +1.2
777,384 - SO0762 0.86 +0.3
777,408 + +1.3
777,468 + +1.9
777,497 + -2.3
777,497 + +1.1
777,497 + +1.1
777,497 + -2.7
777,505 - -1.4
777,505 - -1.1
777,505 - +0.2
777,505 - +0.5
777,517 - +1.4
777,533 - -3.0
777,540 + -2.7
777,556 + +1.6
777,556 + +2.1
777,556 + -0.4
777,617 - +0.6
777,619 - -0.7
777,667 - +0.5
777,927 - SO0763 0.41 +0.0
777,927 - SO0763 0.41 +1.2
777,963 + SO0763 0.58 +1.6
777,963 + SO0763 0.58 +0.9
777,963 + SO0763 0.58 +1.1
777,971 - SO0763 0.61 -2.7
777,971 - SO0763 0.61 -0.5
777,971 - SO0763 0.61 +0.9
777,983 - SO0763 0.67 +1.5
778,021 + SO0763 0.84 +0.7
778,022 + SO0763 0.84 -0.6
778,030 - SO0763 0.88 +1.1
778,030 - SO0763 0.88 +1.2
778,050 + +3.3
778,058 - -1.9
778,106 + -1.8
778,120 + -0.1
778,140 - SO0764 0.12 +0.2
778,158 - SO0764 0.14 -0.9
778,233 + SO0764 0.23 -0.1
778,268 - SO0764 0.28 -2.8
778,275 + SO0764 0.29 +0.1
778,342 + SO0764 0.37 -0.7
778,342 + SO0764 0.37 -0.5
778,350 - SO0764 0.38 +0.7
778,423 + SO0764 0.47 +0.0
778,423 + SO0764 0.47 -1.2
778,515 - SO0764 0.58 -0.5
778,533 + SO0764 0.60 +1.2
778,533 + SO0764 0.60 -0.5
778,541 - SO0764 0.61 +0.4
778,541 - SO0764 0.61 +0.5
778,541 - SO0764 0.61 -1.3
778,541 - SO0764 0.61 -0.0
778,686 - SO0764 0.79 -1.7
778,958 + +2.7
778,958 + +1.7
778,958 + +1.9
778,968 + +1.5
778,978 + +3.2
778,986 - +1.0
779,013 - +0.4
779,021 - -0.7
779,058 + SO0765 0.11 +0.8
779,066 - SO0765 0.12 -0.5
779,108 - SO0765 0.18 -3.0
779,163 + SO0765 0.26 -0.5
779,183 - SO0765 0.29 -3.0
779,206 - SO0765 0.32 +0.1
779,360 + SO0765 0.54 -0.7
779,366 + SO0765 0.55 -1.7
779,386 - SO0765 0.57 -1.0
779,563 + SO0765 0.83 -2.9
779,583 + SO0765 0.85 -1.0
779,583 + SO0765 0.85 +0.7
779,591 - SO0765 0.87 +0.6
779,591 - SO0765 0.87 -0.1
779,663 - +0.1
779,663 - -0.3
779,696 - +0.3
779,734 + -3.3
779,734 + +0.3
779,774 - +2.1

Or see this region's nucleotide sequence