Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0643 and SO0644 are separated by 68 nucleotides SO0644 and SO0645 are separated by 57 nucleotides SO0645 and SO0646 overlap by 14 nucleotides
SO0643: SO0643 - transposase, putative (NCBI ptt file), at 670,490 to 672,637
SO0643
SO0644: SO0644 - prophage MuSo1, DNA transposition protein, putative (NCBI ptt file), at 672,706 to 673,425
SO0644
SO0645: SO0645 - hypothetical protein (NCBI ptt file), at 673,483 to 674,028
SO0645
SO0646: SO0646 - hypothetical protein (NCBI ptt file), at 674,015 to 674,509
SO0646
Position (kb) 672
673
674 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 671.710 kb on - strand, within SO0643 at 671.753 kb on + strand, within SO0643 at 671.876 kb on - strand, within SO0643 at 671.914 kb on - strand, within SO0643 at 671.999 kb on - strand, within SO0643 at 672.043 kb on - strand, within SO0643 at 672.053 kb on - strand, within SO0643 at 672.173 kb on + strand, within SO0643 at 672.308 kb on + strand, within SO0643 at 672.324 kb on + strand, within SO0643 at 672.324 kb on + strand, within SO0643 at 672.324 kb on + strand, within SO0643 at 672.356 kb on - strand, within SO0643 at 672.363 kb on + strand, within SO0643 at 672.366 kb on - strand, within SO0643 at 672.381 kb on - strand, within SO0643 at 672.413 kb on - strand, within SO0643 at 672.528 kb on + strand at 672.746 kb on + strand at 672.753 kb on - strand at 672.957 kb on + strand, within SO0644 at 672.985 kb on - strand, within SO0644 at 673.006 kb on - strand, within SO0644 at 673.094 kb on - strand, within SO0644 at 673.104 kb on + strand, within SO0644 at 673.104 kb on + strand, within SO0644 at 673.106 kb on + strand, within SO0644 at 673.142 kb on + strand, within SO0644 at 673.142 kb on + strand, within SO0644 at 673.142 kb on + strand, within SO0644 at 673.161 kb on + strand, within SO0644 at 673.216 kb on - strand, within SO0644 at 673.258 kb on - strand, within SO0644 at 673.290 kb on + strand, within SO0644 at 673.306 kb on - strand, within SO0644 at 673.337 kb on - strand, within SO0644 at 673.433 kb on - strand at 673.493 kb on + strand at 673.503 kb on + strand at 673.511 kb on + strand at 673.511 kb on + strand at 673.511 kb on - strand at 673.539 kb on - strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.558 kb on + strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.566 kb on - strand, within SO0645 at 673.571 kb on + strand, within SO0645 at 673.571 kb on + strand, within SO0645 at 673.571 kb on + strand, within SO0645 at 673.579 kb on - strand, within SO0645 at 673.589 kb on - strand, within SO0645 at 673.626 kb on + strand, within SO0645 at 673.709 kb on - strand, within SO0645 at 673.778 kb on + strand, within SO0645 at 673.778 kb on + strand, within SO0645 at 673.778 kb on + strand, within SO0645 at 673.778 kb on + strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.786 kb on - strand, within SO0645 at 673.837 kb on + strand, within SO0645 at 673.902 kb on - strand, within SO0645 at 673.948 kb on - strand, within SO0645 at 674.039 kb on + strand at 674.066 kb on - strand, within SO0646 at 674.118 kb on - strand, within SO0646 at 674.186 kb on + strand, within SO0646 at 674.188 kb on + strand, within SO0646 at 674.188 kb on + strand, within SO0646 at 674.193 kb on + strand, within SO0646 at 674.194 kb on - strand, within SO0646 at 674.201 kb on - strand, within SO0646 at 674.262 kb on + strand, within SO0646 at 674.270 kb on - strand, within SO0646 at 674.332 kb on + strand, within SO0646
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 671,710 - SO0643 0.57 +2.1 671,753 + SO0643 0.59 -1.1 671,876 - SO0643 0.65 +0.0 671,914 - SO0643 0.66 -2.8 671,999 - SO0643 0.70 -0.5 672,043 - SO0643 0.72 +0.3 672,053 - SO0643 0.73 -0.4 672,173 + SO0643 0.78 +0.2 672,308 + SO0643 0.85 -2.5 672,324 + SO0643 0.85 -0.8 672,324 + SO0643 0.85 -0.2 672,324 + SO0643 0.85 +0.9 672,356 - SO0643 0.87 -0.7 672,363 + SO0643 0.87 -2.1 672,366 - SO0643 0.87 -0.4 672,381 - SO0643 0.88 -1.2 672,413 - SO0643 0.90 +0.9 672,528 + -1.4 672,746 + -0.2 672,753 - +0.5 672,957 + SO0644 0.35 -1.9 672,985 - SO0644 0.39 -1.6 673,006 - SO0644 0.42 +0.5 673,094 - SO0644 0.54 +0.3 673,104 + SO0644 0.55 -2.7 673,104 + SO0644 0.55 -3.6 673,106 + SO0644 0.56 -1.1 673,142 + SO0644 0.61 -2.8 673,142 + SO0644 0.61 -0.6 673,142 + SO0644 0.61 -0.6 673,161 + SO0644 0.63 -1.4 673,216 - SO0644 0.71 +1.4 673,258 - SO0644 0.77 -2.2 673,290 + SO0644 0.81 -2.8 673,306 - SO0644 0.83 -1.2 673,337 - SO0644 0.88 -3.9 673,433 - +0.6 673,493 + +1.5 673,503 + -0.1 673,511 + -0.7 673,511 + -0.6 673,511 - +1.3 673,539 - SO0645 0.10 +0.9 673,558 + SO0645 0.14 +0.7 673,558 + SO0645 0.14 +1.3 673,558 + +4.3 673,558 + SO0645 0.14 -0.5 673,558 + SO0645 0.14 -3.1 673,558 + SO0645 0.14 -1.0 673,558 + SO0645 0.14 -0.1 673,558 + SO0645 0.14 -0.9 673,566 - SO0645 0.15 +1.7 673,566 - SO0645 0.15 -1.3 673,566 - SO0645 0.15 -0.3 673,566 - SO0645 0.15 +0.7 673,566 - SO0645 0.15 +0.4 673,571 + SO0645 0.16 -1.1 673,571 + SO0645 0.16 -1.9 673,571 + SO0645 0.16 +1.4 673,579 - SO0645 0.18 +0.4 673,589 - SO0645 0.19 +1.5 673,626 + SO0645 0.26 -1.6 673,709 - SO0645 0.41 +0.4 673,778 + SO0645 0.54 -1.8 673,778 + SO0645 0.54 -2.4 673,778 + SO0645 0.54 -0.8 673,778 + SO0645 0.54 -2.1 673,786 - SO0645 0.55 -2.6 673,786 - SO0645 0.55 +1.2 673,786 - SO0645 0.55 +0.6 673,786 - SO0645 0.55 -0.3 673,786 - SO0645 0.55 +0.8 673,837 + SO0645 0.65 -3.6 673,902 - SO0645 0.77 +0.1 673,948 - SO0645 0.85 +0.4 674,039 + -3.0 674,066 - SO0646 0.10 +0.9 674,118 - SO0646 0.21 +1.3 674,186 + SO0646 0.35 -1.1 674,188 + SO0646 0.35 +2.5 674,188 + SO0646 0.35 -2.4 674,193 + SO0646 0.36 -5.6 674,194 - SO0646 0.36 +1.7 674,201 - SO0646 0.38 -1.1 674,262 + SO0646 0.50 -2.4 674,270 - SO0646 0.52 -2.9 674,332 + SO0646 0.64 -3.3
Or see this region's nucleotide sequence