Strain Fitness in Shewanella oneidensis MR-1 around SO0569

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntplsC and SO0568 are separated by 43 nucleotidesSO0568 and SO0569 are separated by 56 nucleotidesSO0569 and SO0570 are separated by 18 nucleotides SO0567: plsC - 1-acyl-sn-glycerol-3-phosphate acyltransferase (NCBI ptt file), at 588,370 to 589,113 plsC SO0568: SO0568 - conserved hypothetical protein (NCBI ptt file), at 589,157 to 589,561 SO0568 SO0569: SO0569 - sensory box/GGDEF family protein (NCBI ptt file), at 589,618 to 590,592 SO0569 SO0570: SO0570 - response regulator (NCBI ptt file), at 590,611 to 591,606 SO0570 Position (kb) 589 590 591Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 588.620 kb on - strand, within plsCat 588.620 kb on - strand, within plsCat 588.625 kb on + strand, within plsCat 588.679 kb on + strand, within plsCat 588.976 kb on - strand, within plsCat 589.203 kb on + strand, within SO0568at 589.208 kb on + strand, within SO0568at 589.208 kb on + strand, within SO0568at 589.208 kb on + strand, within SO0568at 589.252 kb on - strand, within SO0568at 589.254 kb on + strand, within SO0568at 589.254 kb on + strand, within SO0568at 589.255 kb on - strand, within SO0568at 589.383 kb on + strand, within SO0568at 589.541 kb on + strandat 589.556 kb on + strandat 589.620 kb on + strandat 589.642 kb on + strandat 589.650 kb on - strandat 589.650 kb on - strandat 589.650 kb on - strandat 589.681 kb on + strandat 589.749 kb on + strand, within SO0569at 589.749 kb on + strand, within SO0569at 589.749 kb on + strand, within SO0569at 589.749 kb on + strand, within SO0569at 589.757 kb on - strand, within SO0569at 589.757 kb on - strand, within SO0569at 589.757 kb on - strand, within SO0569at 589.782 kb on - strand, within SO0569at 589.782 kb on - strand, within SO0569at 589.834 kb on + strand, within SO0569at 589.861 kb on + strand, within SO0569at 589.869 kb on - strand, within SO0569at 589.870 kb on - strand, within SO0569at 589.879 kb on + strand, within SO0569at 589.896 kb on + strand, within SO0569at 589.933 kb on + strand, within SO0569at 589.965 kb on - strand, within SO0569at 590.161 kb on - strand, within SO0569at 590.293 kb on - strand, within SO0569at 590.403 kb on + strand, within SO0569at 590.416 kb on + strand, within SO0569at 590.424 kb on - strand, within SO0569at 590.477 kb on - strand, within SO0569at 590.514 kb on - strandat 590.526 kb on + strandat 590.534 kb on - strandat 590.534 kb on - strandat 590.534 kb on - strandat 590.542 kb on - strandat 590.604 kb on - strandat 590.777 kb on + strand, within SO0570at 590.785 kb on - strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.788 kb on + strand, within SO0570at 590.796 kb on + strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.796 kb on - strand, within SO0570at 590.809 kb on - strand, within SO0570at 590.832 kb on + strand, within SO0570at 590.860 kb on + strand, within SO0570at 590.878 kb on + strand, within SO0570at 591.001 kb on + strand, within SO0570at 591.220 kb on + strand, within SO0570at 591.234 kb on + strand, within SO0570at 591.249 kb on - strand, within SO0570at 591.323 kb on + strand, within SO0570at 591.323 kb on + strand, within SO0570at 591.341 kb on + strand, within SO0570at 591.414 kb on + strand, within SO0570at 591.414 kb on + strand, within SO0570at 591.471 kb on - strand, within SO0570at 591.471 kb on - strand, within SO0570at 591.471 kb on - strand, within SO0570at 591.471 kb on - strand, within SO0570at 591.586 kb on + strandat 591.586 kb on + strandat 591.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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588,620 - plsC SO0567 0.34 -0.4
588,620 - plsC SO0567 0.34 -1.3
588,625 + plsC SO0567 0.34 +1.3
588,679 + plsC SO0567 0.42 +0.0
588,976 - plsC SO0567 0.81 +0.6
589,203 + SO0568 0.11 +0.0
589,208 + SO0568 0.13 +2.8
589,208 + SO0568 0.13 +0.9
589,208 + SO0568 0.13 -1.2
589,252 - SO0568 0.23 -0.2
589,254 + SO0568 0.24 -0.3
589,254 + SO0568 0.24 -0.4
589,255 - SO0568 0.24 +1.7
589,383 + SO0568 0.56 -1.1
589,541 + +0.8
589,556 + -0.3
589,620 + -1.0
589,642 + +0.7
589,650 - -2.3
589,650 - -2.3
589,650 - -2.3
589,681 + -1.6
589,749 + SO0569 0.13 -1.8
589,749 + SO0569 0.13 -1.6
589,749 + SO0569 0.13 -1.8
589,749 + SO0569 0.13 -0.2
589,757 - SO0569 0.14 -0.1
589,757 - SO0569 0.14 +0.0
589,757 - SO0569 0.14 -0.9
589,782 - SO0569 0.17 -1.2
589,782 - SO0569 0.17 -0.8
589,834 + SO0569 0.22 -0.1
589,861 + SO0569 0.25 -2.4
589,869 - SO0569 0.26 -2.2
589,870 - SO0569 0.26 -2.3
589,879 + SO0569 0.27 -0.7
589,896 + SO0569 0.29 -1.5
589,933 + SO0569 0.32 +0.2
589,965 - SO0569 0.36 -0.6
590,161 - SO0569 0.56 -2.2
590,293 - SO0569 0.69 +0.1
590,403 + SO0569 0.81 -0.1
590,416 + SO0569 0.82 -0.4
590,424 - SO0569 0.83 -2.2
590,477 - SO0569 0.88 -2.6
590,514 - +0.4
590,526 + -1.1
590,534 - -1.2
590,534 - -1.5
590,534 - -0.0
590,542 - -0.6
590,604 - +0.0
590,777 + SO0570 0.17 -1.6
590,785 - SO0570 0.17 -0.2
590,788 + SO0570 0.18 -1.6
590,788 + SO0570 0.18 -0.8
590,788 + SO0570 0.18 -2.0
590,788 + SO0570 0.18 -1.2
590,788 + SO0570 0.18 -1.8
590,788 + SO0570 0.18 -0.8
590,788 + SO0570 0.18 +0.4
590,796 + SO0570 0.19 -0.3
590,796 - SO0570 0.19 -2.3
590,796 - SO0570 0.19 -2.0
590,796 - SO0570 0.19 +0.3
590,796 - SO0570 0.19 +1.0
590,796 - SO0570 0.19 +0.4
590,796 - SO0570 0.19 -0.0
590,796 - SO0570 0.19 -1.2
590,796 - SO0570 0.19 -0.9
590,796 - SO0570 0.19 -1.6
590,796 - SO0570 0.19 -0.5
590,796 - SO0570 0.19 +1.4
590,809 - SO0570 0.20 -0.2
590,832 + SO0570 0.22 +0.2
590,860 + SO0570 0.25 -1.7
590,878 + SO0570 0.27 -0.2
591,001 + SO0570 0.39 -0.9
591,220 + SO0570 0.61 -1.0
591,234 + SO0570 0.63 -3.7
591,249 - SO0570 0.64 -1.6
591,323 + SO0570 0.71 -1.3
591,323 + SO0570 0.71 +0.4
591,341 + SO0570 0.73 -1.4
591,414 + SO0570 0.81 -1.9
591,414 + SO0570 0.81 -1.8
591,471 - SO0570 0.86 +0.0
591,471 - SO0570 0.86 -0.2
591,471 - SO0570 0.86 -0.1
591,471 - SO0570 0.86 -3.1
591,586 + +0.1
591,586 + -0.6
591,591 + -0.8

Or see this region's nucleotide sequence