Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0540 and SO0541 are separated by 123 nucleotides SO0541 and SO0542 are separated by 43 nucleotides
SO0540: SO0540 - conserved hypothetical protein (NCBI ptt file), at 559,697 to 560,500
SO0540
SO0541: SO0541 - metallo-beta-lactamase family protein (NCBI ptt file), at 560,624 to 562,060
SO0541
SO0542: SO0542 - conserved hypothetical protein (NCBI ptt file), at 562,104 to 563,459
SO0542
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 559.624 kb on - strand at 559.635 kb on - strand at 559.655 kb on + strand at 559.655 kb on + strand at 559.656 kb on + strand at 559.663 kb on - strand at 559.663 kb on - strand at 559.673 kb on + strand at 559.706 kb on + strand at 560.024 kb on + strand, within SO0540 at 560.112 kb on + strand, within SO0540 at 560.112 kb on + strand, within SO0540 at 560.119 kb on + strand, within SO0540 at 560.281 kb on - strand, within SO0540 at 560.372 kb on + strand, within SO0540 at 560.451 kb on - strand at 560.453 kb on + strand at 560.759 kb on + strand at 560.781 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.795 kb on + strand, within SO0541 at 560.803 kb on - strand, within SO0541 at 560.803 kb on - strand, within SO0541 at 560.886 kb on + strand, within SO0541 at 560.886 kb on + strand, within SO0541 at 560.886 kb on + strand, within SO0541 at 560.894 kb on - strand, within SO0541 at 560.894 kb on - strand, within SO0541 at 560.894 kb on - strand, within SO0541 at 560.894 kb on - strand, within SO0541 at 560.921 kb on + strand, within SO0541 at 560.971 kb on + strand, within SO0541 at 561.020 kb on - strand, within SO0541 at 561.182 kb on + strand, within SO0541 at 561.190 kb on - strand, within SO0541 at 561.356 kb on - strand, within SO0541 at 561.467 kb on - strand, within SO0541 at 561.655 kb on + strand, within SO0541 at 561.771 kb on + strand, within SO0541 at 561.779 kb on - strand, within SO0541 at 561.796 kb on - strand, within SO0541 at 561.820 kb on + strand, within SO0541 at 561.820 kb on + strand, within SO0541 at 561.830 kb on + strand, within SO0541 at 561.838 kb on - strand, within SO0541 at 561.913 kb on + strand, within SO0541 at 561.914 kb on + strand, within SO0541 at 562.074 kb on + strand at 562.074 kb on + strand at 562.082 kb on - strand at 562.082 kb on - strand at 562.154 kb on + strand at 562.154 kb on + strand at 562.164 kb on + strand at 562.164 kb on + strand at 562.202 kb on - strand at 562.219 kb on - strand at 562.226 kb on + strand at 562.288 kb on + strand, within SO0542 at 562.390 kb on - strand, within SO0542 at 562.400 kb on + strand, within SO0542 at 562.546 kb on - strand, within SO0542 at 562.596 kb on + strand, within SO0542 at 562.688 kb on - strand, within SO0542 at 562.729 kb on + strand, within SO0542 at 562.739 kb on + strand, within SO0542 at 562.742 kb on - strand, within SO0542 at 562.762 kb on - strand, within SO0542 at 562.762 kb on - strand, within SO0542 at 562.843 kb on - strand, within SO0542
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 559,624 - -1.1 559,635 - -1.2 559,655 + -1.3 559,655 + +0.5 559,656 + +1.1 559,663 - -0.2 559,663 - -1.1 559,673 + +0.2 559,706 + -1.3 560,024 + SO0540 0.41 +0.9 560,112 + SO0540 0.52 -0.1 560,112 + SO0540 0.52 -1.1 560,119 + SO0540 0.52 -2.3 560,281 - SO0540 0.73 +1.1 560,372 + SO0540 0.84 +0.5 560,451 - -1.9 560,453 + +0.5 560,759 + -1.1 560,781 + SO0541 0.11 -2.3 560,795 + SO0541 0.12 +0.1 560,795 + SO0541 0.12 +0.4 560,795 + SO0541 0.12 -0.4 560,795 + SO0541 0.12 +0.3 560,795 + SO0541 0.12 -2.1 560,795 + SO0541 0.12 -0.1 560,795 + SO0541 0.12 +0.7 560,803 - SO0541 0.12 +0.4 560,803 - SO0541 0.12 +2.2 560,886 + SO0541 0.18 +1.3 560,886 + SO0541 0.18 +0.2 560,886 + SO0541 0.18 -1.9 560,894 - SO0541 0.19 +0.2 560,894 - SO0541 0.19 +1.4 560,894 - SO0541 0.19 +1.0 560,894 - SO0541 0.19 +0.6 560,921 + SO0541 0.21 +1.0 560,971 + SO0541 0.24 +0.5 561,020 - SO0541 0.28 +2.3 561,182 + SO0541 0.39 -0.1 561,190 - SO0541 0.39 +1.1 561,356 - SO0541 0.51 +0.8 561,467 - SO0541 0.59 -0.7 561,655 + SO0541 0.72 -0.5 561,771 + SO0541 0.80 +0.4 561,779 - SO0541 0.80 +0.8 561,796 - SO0541 0.82 -0.5 561,820 + SO0541 0.83 -2.4 561,820 + SO0541 0.83 +0.8 561,830 + SO0541 0.84 +0.6 561,838 - SO0541 0.84 -0.3 561,913 + SO0541 0.90 +0.9 561,914 + SO0541 0.90 +1.1 562,074 + +1.3 562,074 + +0.7 562,082 - +0.7 562,082 - -3.3 562,154 + -0.7 562,154 + +1.0 562,164 + +0.7 562,164 + -1.7 562,202 - +0.1 562,219 - +3.1 562,226 + +1.5 562,288 + SO0542 0.14 +0.0 562,390 - SO0542 0.21 +1.1 562,400 + SO0542 0.22 +1.2 562,546 - SO0542 0.33 +0.5 562,596 + SO0542 0.36 -2.1 562,688 - SO0542 0.43 -0.2 562,729 + SO0542 0.46 +2.1 562,739 + SO0542 0.47 +1.1 562,742 - SO0542 0.47 -2.6 562,762 - SO0542 0.49 +0.4 562,762 - SO0542 0.49 -1.8 562,843 - SO0542 0.54 +0.6
Or see this region's nucleotide sequence