Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0523 and SO0524 are separated by 244 nucleotides SO0524 and SO0525 are separated by 1 nucleotides
SO0523: SO0523 - transcriptional regulator, LysR family (NCBI ptt file), at 546,161 to 547,093
SO0523
SO0524: SO0524 - HlyD family secretion protein (NCBI ptt file), at 547,338 to 548,243
SO0524
SO0525: SO0525 - drug resistance transporter, EmrB/QacA family protein (NCBI ptt file), at 548,245 to 549,864
SO0525
Position (kb) 547
548
549 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 546.393 kb on - strand, within SO0523 at 546.395 kb on - strand, within SO0523 at 546.464 kb on - strand, within SO0523 at 546.499 kb on - strand, within SO0523 at 546.501 kb on + strand, within SO0523 at 546.506 kb on + strand, within SO0523 at 546.615 kb on + strand, within SO0523 at 546.718 kb on + strand, within SO0523 at 546.731 kb on + strand, within SO0523 at 546.741 kb on + strand, within SO0523 at 546.795 kb on - strand, within SO0523 at 546.843 kb on + strand, within SO0523 at 546.851 kb on - strand, within SO0523 at 546.875 kb on + strand, within SO0523 at 546.933 kb on - strand, within SO0523 at 546.939 kb on - strand, within SO0523 at 547.005 kb on + strand at 547.043 kb on - strand at 547.044 kb on - strand at 547.155 kb on + strand at 547.163 kb on - strand at 547.163 kb on - strand at 547.208 kb on + strand at 547.208 kb on + strand at 547.251 kb on + strand at 547.357 kb on + strand at 547.409 kb on + strand at 547.479 kb on + strand, within SO0524 at 547.479 kb on + strand, within SO0524 at 547.487 kb on - strand, within SO0524 at 547.503 kb on + strand, within SO0524 at 547.524 kb on + strand, within SO0524 at 547.565 kb on + strand, within SO0524 at 547.570 kb on + strand, within SO0524 at 547.578 kb on - strand, within SO0524 at 547.581 kb on + strand, within SO0524 at 547.608 kb on - strand, within SO0524 at 547.623 kb on + strand, within SO0524 at 547.693 kb on - strand, within SO0524 at 547.747 kb on - strand, within SO0524 at 547.777 kb on - strand, within SO0524 at 547.814 kb on - strand, within SO0524 at 547.885 kb on + strand, within SO0524 at 547.890 kb on + strand, within SO0524 at 547.890 kb on + strand, within SO0524 at 547.898 kb on - strand, within SO0524 at 547.898 kb on - strand, within SO0524 at 547.910 kb on + strand, within SO0524 at 547.910 kb on + strand, within SO0524 at 547.920 kb on + strand, within SO0524 at 547.928 kb on - strand, within SO0524 at 547.980 kb on + strand, within SO0524 at 547.980 kb on + strand, within SO0524 at 547.985 kb on + strand, within SO0524 at 547.993 kb on - strand, within SO0524 at 547.993 kb on - strand, within SO0524 at 548.039 kb on + strand, within SO0524 at 548.159 kb on + strand at 548.178 kb on - strand at 548.178 kb on - strand at 548.183 kb on + strand at 548.189 kb on + strand at 548.191 kb on - strand at 548.247 kb on - strand at 548.247 kb on - strand at 548.309 kb on + strand at 548.309 kb on + strand at 548.369 kb on + strand at 548.429 kb on + strand, within SO0525 at 548.519 kb on + strand, within SO0525 at 548.519 kb on + strand, within SO0525 at 548.519 kb on + strand, within SO0525 at 548.527 kb on - strand, within SO0525 at 548.527 kb on - strand, within SO0525 at 548.527 kb on - strand, within SO0525 at 548.527 kb on - strand, within SO0525 at 548.527 kb on - strand, within SO0525 at 548.558 kb on - strand, within SO0525 at 548.596 kb on - strand, within SO0525 at 548.661 kb on - strand, within SO0525 at 548.744 kb on + strand, within SO0525 at 548.764 kb on - strand, within SO0525 at 548.767 kb on + strand, within SO0525 at 548.775 kb on - strand, within SO0525 at 548.775 kb on - strand, within SO0525 at 548.903 kb on + strand, within SO0525 at 548.911 kb on - strand, within SO0525 at 548.948 kb on + strand, within SO0525 at 548.956 kb on - strand, within SO0525 at 548.956 kb on - strand, within SO0525 at 548.956 kb on - strand, within SO0525 at 548.961 kb on + strand, within SO0525 at 548.963 kb on - strand, within SO0525 at 548.968 kb on - strand, within SO0525 at 548.993 kb on + strand, within SO0525 at 549.237 kb on - strand, within SO0525 at 549.237 kb on - strand, within SO0525
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 546,393 - SO0523 0.25 -0.6 546,395 - SO0523 0.25 -0.5 546,464 - SO0523 0.32 -0.0 546,499 - SO0523 0.36 +0.7 546,501 + SO0523 0.36 +0.7 546,506 + SO0523 0.37 +0.4 546,615 + SO0523 0.49 -0.7 546,718 + SO0523 0.60 +0.4 546,731 + SO0523 0.61 +2.6 546,741 + SO0523 0.62 -0.8 546,795 - SO0523 0.68 -2.1 546,843 + SO0523 0.73 +0.2 546,851 - SO0523 0.74 +1.7 546,875 + SO0523 0.77 -2.0 546,933 - SO0523 0.83 +0.7 546,939 - SO0523 0.83 -0.3 547,005 + +0.7 547,043 - +1.2 547,044 - -1.2 547,155 + -1.2 547,163 - +1.1 547,163 - +0.0 547,208 + -0.8 547,208 + +0.3 547,251 + -0.7 547,357 + +1.1 547,409 + +0.6 547,479 + SO0524 0.16 +1.7 547,479 + SO0524 0.16 -2.4 547,487 - SO0524 0.16 -0.6 547,503 + SO0524 0.18 +1.4 547,524 + SO0524 0.21 +2.5 547,565 + SO0524 0.25 +0.3 547,570 + SO0524 0.26 +0.4 547,578 - SO0524 0.26 -0.8 547,581 + SO0524 0.27 -0.4 547,608 - SO0524 0.30 +1.2 547,623 + SO0524 0.31 +1.4 547,693 - SO0524 0.39 +1.3 547,747 - SO0524 0.45 +0.3 547,777 - SO0524 0.48 +1.4 547,814 - SO0524 0.53 +0.2 547,885 + SO0524 0.60 +0.5 547,890 + SO0524 0.61 +1.4 547,890 + SO0524 0.61 +0.1 547,898 - SO0524 0.62 +1.1 547,898 - SO0524 0.62 +1.1 547,910 + SO0524 0.63 +0.3 547,910 + SO0524 0.63 -0.8 547,920 + SO0524 0.64 -0.1 547,928 - SO0524 0.65 +1.9 547,980 + SO0524 0.71 -3.2 547,980 + SO0524 0.71 -2.2 547,985 + SO0524 0.71 -3.5 547,993 - SO0524 0.72 +0.4 547,993 - SO0524 0.72 -0.5 548,039 + SO0524 0.77 +0.7 548,159 + +3.1 548,178 - -1.0 548,178 - -0.1 548,183 + +0.4 548,189 + -2.2 548,191 - +0.4 548,247 - -2.1 548,247 - +0.4 548,309 + +0.9 548,309 + +1.8 548,369 + +0.0 548,429 + SO0525 0.11 +1.2 548,519 + SO0525 0.17 +0.7 548,519 + SO0525 0.17 -0.4 548,519 + SO0525 0.17 +3.4 548,527 - SO0525 0.17 -0.5 548,527 - SO0525 0.17 +1.0 548,527 - SO0525 0.17 +1.2 548,527 - SO0525 0.17 -2.2 548,527 - SO0525 0.17 -0.4 548,558 - SO0525 0.19 +1.3 548,596 - SO0525 0.22 +0.5 548,661 - SO0525 0.26 -0.4 548,744 + SO0525 0.31 -1.6 548,764 - SO0525 0.32 +0.7 548,767 + SO0525 0.32 +0.6 548,775 - SO0525 0.33 +0.5 548,775 - SO0525 0.33 +2.5 548,903 + SO0525 0.41 +1.9 548,911 - SO0525 0.41 -3.0 548,948 + SO0525 0.43 -3.0 548,956 - SO0525 0.44 -3.4 548,956 - SO0525 0.44 +0.9 548,956 - SO0525 0.44 +1.1 548,961 + SO0525 0.44 +0.1 548,963 - SO0525 0.44 +1.7 548,968 - SO0525 0.45 +1.1 548,993 + SO0525 0.46 -0.2 549,237 - SO0525 0.61 -2.5 549,237 - SO0525 0.61 +2.7
Or see this region's nucleotide sequence