Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nosD and nosF are separated by 44 nucleotides nosF and nosY are separated by 53 nucleotides
SO0486: nosD - copper ABC transporter, periplasmic copper-binding protein (NCBI ptt file), at 509,313 to 510,587
nosD
SO0487: nosF - copper ABC transporter, ATP-binding protein (NCBI ptt file), at 510,632 to 511,630
nosF
SO0488: nosY - copper ABC transporter, permease protein (NCBI ptt file), at 511,684 to 512,523
nosY
Position (kb) 510
511
512 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 509.650 kb on + strand, within nosD at 509.655 kb on - strand, within nosD at 509.820 kb on - strand, within nosD at 509.869 kb on - strand, within nosD at 509.871 kb on + strand, within nosD at 509.925 kb on + strand, within nosD at 509.945 kb on + strand, within nosD at 509.994 kb on - strand, within nosD at 510.077 kb on + strand, within nosD at 510.103 kb on + strand, within nosD at 510.127 kb on + strand, within nosD at 510.127 kb on - strand, within nosD at 510.127 kb on - strand, within nosD at 510.179 kb on + strand, within nosD at 510.212 kb on + strand, within nosD at 510.234 kb on + strand, within nosD at 510.291 kb on - strand, within nosD at 510.306 kb on + strand, within nosD at 510.360 kb on - strand, within nosD at 510.388 kb on + strand, within nosD at 510.396 kb on - strand, within nosD at 510.396 kb on - strand, within nosD at 510.411 kb on + strand, within nosD at 510.419 kb on - strand, within nosD at 510.480 kb on - strand at 510.491 kb on + strand at 510.620 kb on - strand at 510.791 kb on - strand, within nosF at 510.849 kb on + strand, within nosF at 510.972 kb on - strand, within nosF at 510.980 kb on - strand, within nosF at 511.030 kb on + strand, within nosF at 511.038 kb on - strand, within nosF at 511.070 kb on + strand, within nosF at 511.078 kb on - strand, within nosF at 511.109 kb on - strand, within nosF at 511.137 kb on + strand, within nosF at 511.145 kb on - strand, within nosF at 511.190 kb on + strand, within nosF at 511.198 kb on - strand, within nosF at 511.198 kb on - strand, within nosF at 511.274 kb on + strand, within nosF at 511.303 kb on - strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.305 kb on + strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.313 kb on - strand, within nosF at 511.412 kb on + strand, within nosF at 511.418 kb on + strand, within nosF at 511.418 kb on + strand, within nosF at 511.418 kb on + strand, within nosF at 511.426 kb on - strand, within nosF at 511.434 kb on + strand, within nosF at 511.434 kb on + strand, within nosF at 511.434 kb on + strand, within nosF at 511.434 kb on + strand, within nosF at 511.442 kb on - strand, within nosF at 511.442 kb on - strand, within nosF at 511.554 kb on + strand at 511.581 kb on - strand at 511.586 kb on + strand at 511.586 kb on + strand at 511.638 kb on - strand at 511.698 kb on + strand at 511.706 kb on - strand at 511.785 kb on - strand, within nosY at 511.808 kb on + strand, within nosY at 511.808 kb on + strand, within nosY at 511.808 kb on + strand, within nosY at 511.808 kb on + strand, within nosY at 511.816 kb on - strand, within nosY at 511.816 kb on - strand, within nosY at 511.823 kb on + strand, within nosY at 511.831 kb on - strand, within nosY at 511.831 kb on - strand, within nosY at 511.839 kb on - strand, within nosY at 512.095 kb on + strand, within nosY at 512.122 kb on + strand, within nosY at 512.148 kb on + strand, within nosY at 512.150 kb on + strand, within nosY at 512.191 kb on - strand, within nosY at 512.210 kb on + strand, within nosY at 512.218 kb on + strand, within nosY at 512.242 kb on - strand, within nosY at 512.365 kb on - strand, within nosY at 512.413 kb on - strand, within nosY at 512.428 kb on + strand, within nosY at 512.448 kb on - strand at 512.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 509,650 + nosD SO0486 0.26 +0.3 509,655 - nosD SO0486 0.27 -1.2 509,820 - nosD SO0486 0.40 -3.1 509,869 - nosD SO0486 0.44 -1.2 509,871 + nosD SO0486 0.44 -2.7 509,925 + nosD SO0486 0.48 -0.4 509,945 + nosD SO0486 0.50 +0.9 509,994 - nosD SO0486 0.53 +0.9 510,077 + nosD SO0486 0.60 -1.7 510,103 + nosD SO0486 0.62 +1.2 510,127 + nosD SO0486 0.64 -1.2 510,127 - nosD SO0486 0.64 +1.4 510,127 - nosD SO0486 0.64 -0.8 510,179 + nosD SO0486 0.68 -1.8 510,212 + nosD SO0486 0.71 -0.2 510,234 + nosD SO0486 0.72 +0.2 510,291 - nosD SO0486 0.77 +0.1 510,306 + nosD SO0486 0.78 +0.2 510,360 - nosD SO0486 0.82 -1.1 510,388 + nosD SO0486 0.84 -0.4 510,396 - nosD SO0486 0.85 +1.1 510,396 - nosD SO0486 0.85 +0.3 510,411 + nosD SO0486 0.86 +1.2 510,419 - nosD SO0486 0.87 +0.3 510,480 - +0.5 510,491 + +1.7 510,620 - -0.3 510,791 - nosF SO0487 0.16 +0.3 510,849 + nosF SO0487 0.22 -1.7 510,972 - nosF SO0487 0.34 +1.3 510,980 - nosF SO0487 0.35 +0.1 511,030 + nosF SO0487 0.40 -0.1 511,038 - nosF SO0487 0.41 -2.4 511,070 + nosF SO0487 0.44 -1.0 511,078 - nosF SO0487 0.45 +1.1 511,109 - nosF SO0487 0.48 +3.0 511,137 + nosF SO0487 0.51 +1.7 511,145 - nosF SO0487 0.51 +0.8 511,190 + nosF SO0487 0.56 +1.2 511,198 - nosF SO0487 0.57 -1.1 511,198 - nosF SO0487 0.57 +1.3 511,274 + nosF SO0487 0.64 +1.9 511,303 - nosF SO0487 0.67 +3.3 511,305 + nosF SO0487 0.67 +1.3 511,305 + nosF SO0487 0.67 +0.4 511,305 + nosF SO0487 0.67 +0.2 511,305 + nosF SO0487 0.67 -2.4 511,305 + nosF SO0487 0.67 +0.1 511,305 + nosF SO0487 0.67 -1.4 511,305 + nosF SO0487 0.67 +1.2 511,305 + nosF SO0487 0.67 -3.4 511,305 + nosF SO0487 0.67 +1.6 511,305 + nosF SO0487 0.67 +0.0 511,305 + nosF SO0487 0.67 +2.3 511,305 + nosF SO0487 0.67 +3.2 511,305 + nosF SO0487 0.67 -0.4 511,305 + nosF SO0487 0.67 -0.9 511,305 + nosF SO0487 0.67 +0.2 511,305 + nosF SO0487 0.67 -0.3 511,305 + nosF SO0487 0.67 -1.1 511,305 + nosF SO0487 0.67 +0.9 511,305 + nosF SO0487 0.67 -0.2 511,305 + nosF SO0487 0.67 -0.4 511,305 + nosF SO0487 0.67 +0.1 511,305 + nosF SO0487 0.67 -1.4 511,305 + nosF SO0487 0.67 -0.8 511,305 + nosF SO0487 0.67 +1.1 511,305 + nosF SO0487 0.67 -2.2 511,305 + nosF SO0487 0.67 +0.4 511,313 - nosF SO0487 0.68 +0.9 511,313 - nosF SO0487 0.68 -0.0 511,313 - nosF SO0487 0.68 +2.3 511,313 - nosF SO0487 0.68 +2.3 511,313 - nosF SO0487 0.68 +1.5 511,313 - nosF SO0487 0.68 +1.1 511,313 - nosF SO0487 0.68 -0.2 511,313 - nosF SO0487 0.68 +1.5 511,313 - nosF SO0487 0.68 -0.4 511,313 - nosF SO0487 0.68 -0.3 511,313 - nosF SO0487 0.68 +0.4 511,313 - nosF SO0487 0.68 +1.0 511,313 - nosF SO0487 0.68 -1.7 511,313 - nosF SO0487 0.68 +2.1 511,313 - nosF SO0487 0.68 -1.8 511,313 - nosF SO0487 0.68 +0.2 511,313 - nosF SO0487 0.68 +1.8 511,313 - nosF SO0487 0.68 -0.4 511,313 - nosF SO0487 0.68 +0.2 511,313 - nosF SO0487 0.68 +1.4 511,313 - nosF SO0487 0.68 +0.6 511,313 - nosF SO0487 0.68 -0.2 511,313 - nosF SO0487 0.68 +1.3 511,313 - nosF SO0487 0.68 -2.8 511,313 - nosF SO0487 0.68 +0.2 511,313 - nosF SO0487 0.68 +1.0 511,412 + nosF SO0487 0.78 -0.9 511,418 + nosF SO0487 0.79 +0.4 511,418 + nosF SO0487 0.79 +1.7 511,418 + nosF SO0487 0.79 +2.4 511,426 - nosF SO0487 0.79 +0.2 511,434 + nosF SO0487 0.80 +0.2 511,434 + nosF SO0487 0.80 +2.8 511,434 + nosF SO0487 0.80 +0.2 511,434 + nosF SO0487 0.80 -1.1 511,442 - nosF SO0487 0.81 -2.7 511,442 - nosF SO0487 0.81 -0.8 511,554 + -0.5 511,581 - -1.2 511,586 + -0.1 511,586 + -0.2 511,638 - +2.4 511,698 + +1.8 511,706 - +1.5 511,785 - nosY SO0488 0.12 +1.2 511,808 + nosY SO0488 0.15 +1.3 511,808 + nosY SO0488 0.15 +0.3 511,808 + nosY SO0488 0.15 -1.9 511,808 + nosY SO0488 0.15 -2.6 511,816 - nosY SO0488 0.16 -1.1 511,816 - nosY SO0488 0.16 -0.5 511,823 + nosY SO0488 0.17 +0.3 511,831 - nosY SO0488 0.17 -0.3 511,831 - nosY SO0488 0.17 +1.8 511,839 - nosY SO0488 0.18 -0.5 512,095 + nosY SO0488 0.49 -3.4 512,122 + nosY SO0488 0.52 -1.7 512,148 + nosY SO0488 0.55 -0.2 512,150 + nosY SO0488 0.55 +0.6 512,191 - nosY SO0488 0.60 +0.7 512,210 + nosY SO0488 0.63 +0.7 512,218 + nosY SO0488 0.64 +1.4 512,242 - nosY SO0488 0.66 +1.8 512,365 - nosY SO0488 0.81 +0.3 512,413 - nosY SO0488 0.87 -1.2 512,428 + nosY SO0488 0.89 -4.1 512,448 - -0.0 512,448 - -0.3
Or see this region's nucleotide sequence