Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0387 and SO0388 are separated by 290 nucleotides SO0388 and SO0389 overlap by 17 nucleotides SO0389 and SO0390 overlap by 17 nucleotides
SO0387: SO0387 - hypothetical protein (NCBI ptt file), at 400,896 to 401,720
SO0387
SO0388: SO0388 - site-specific recombinase, phage integrase family (NCBI ptt file), at 402,011 to 403,300
SO0388
SO0389: SO0389 - hypothetical protein (NCBI ptt file), at 403,284 to 403,895
SO0389
SO0390: SO0390 - hypothetical protein (NCBI ptt file), at 403,879 to 404,178
SO0390
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 401.021 kb on + strand, within SO0387 at 401.021 kb on + strand, within SO0387 at 401.039 kb on + strand, within SO0387 at 401.050 kb on + strand, within SO0387 at 401.050 kb on + strand, within SO0387 at 401.126 kb on + strand, within SO0387 at 401.128 kb on - strand, within SO0387 at 401.147 kb on + strand, within SO0387 at 401.155 kb on - strand, within SO0387 at 401.159 kb on + strand, within SO0387 at 401.165 kb on + strand, within SO0387 at 401.165 kb on + strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.222 kb on + strand, within SO0387 at 401.230 kb on - strand at 401.252 kb on - strand, within SO0387 at 401.253 kb on - strand, within SO0387 at 401.309 kb on + strand, within SO0387 at 401.310 kb on + strand, within SO0387 at 401.318 kb on - strand, within SO0387 at 401.318 kb on - strand, within SO0387 at 401.318 kb on - strand, within SO0387 at 401.337 kb on + strand, within SO0387 at 401.369 kb on + strand, within SO0387 at 401.369 kb on + strand, within SO0387 at 401.385 kb on + strand, within SO0387 at 401.393 kb on - strand, within SO0387 at 401.393 kb on - strand, within SO0387 at 401.446 kb on - strand, within SO0387 at 401.463 kb on + strand, within SO0387 at 401.506 kb on + strand, within SO0387 at 401.548 kb on - strand, within SO0387 at 401.548 kb on - strand, within SO0387 at 401.576 kb on - strand, within SO0387 at 401.576 kb on - strand, within SO0387 at 401.614 kb on + strand, within SO0387 at 401.614 kb on + strand, within SO0387 at 401.622 kb on - strand, within SO0387 at 401.622 kb on - strand, within SO0387 at 401.624 kb on - strand, within SO0387 at 401.664 kb on - strand at 401.675 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.683 kb on - strand at 401.683 kb on - strand at 401.739 kb on + strand at 401.755 kb on + strand at 402.002 kb on - strand at 402.109 kb on - strand at 402.109 kb on - strand at 402.110 kb on - strand at 402.114 kb on + strand at 402.114 kb on + strand at 402.115 kb on + strand at 402.123 kb on - strand at 402.123 kb on - strand at 402.139 kb on + strand at 402.139 kb on + strand at 402.139 kb on + strand at 402.147 kb on - strand, within SO0388 at 402.147 kb on - strand, within SO0388 at 402.198 kb on + strand, within SO0388 at 402.206 kb on - strand, within SO0388 at 402.267 kb on + strand, within SO0388 at 402.268 kb on + strand, within SO0388 at 402.272 kb on - strand, within SO0388 at 402.317 kb on - strand, within SO0388 at 402.317 kb on - strand, within SO0388 at 402.319 kb on + strand, within SO0388 at 402.327 kb on - strand, within SO0388 at 402.327 kb on - strand, within SO0388 at 402.438 kb on - strand, within SO0388 at 402.445 kb on - strand, within SO0388 at 402.453 kb on - strand, within SO0388 at 402.465 kb on - strand, within SO0388 at 402.514 kb on + strand, within SO0388 at 402.520 kb on + strand, within SO0388 at 402.533 kb on + strand, within SO0388 at 402.613 kb on - strand, within SO0388 at 402.613 kb on - strand, within SO0388 at 402.766 kb on - strand, within SO0388 at 402.830 kb on + strand, within SO0388 at 402.830 kb on + strand, within SO0388 at 402.846 kb on + strand, within SO0388 at 402.924 kb on + strand, within SO0388 at 402.924 kb on + strand, within SO0388 at 402.924 kb on + strand, within SO0388 at 402.924 kb on + strand, within SO0388 at 402.924 kb on + strand, within SO0388 at 402.924 kb on + strand, within SO0388 at 402.924 kb on + strand, within SO0388 at 402.932 kb on - strand, within SO0388 at 402.932 kb on - strand, within SO0388 at 402.932 kb on - strand, within SO0388 at 402.994 kb on + strand, within SO0388 at 402.994 kb on + strand, within SO0388 at 403.036 kb on + strand, within SO0388 at 403.105 kb on + strand, within SO0388 at 403.115 kb on - strand, within SO0388 at 403.214 kb on - strand at 403.227 kb on - strand at 403.240 kb on + strand at 403.240 kb on + strand at 403.337 kb on + strand at 403.344 kb on + strand at 403.344 kb on + strand at 403.345 kb on - strand at 403.358 kb on + strand, within SO0389 at 403.371 kb on - strand, within SO0389 at 403.450 kb on + strand, within SO0389 at 403.589 kb on + strand, within SO0389 at 403.608 kb on + strand, within SO0389 at 403.644 kb on + strand, within SO0389 at 403.795 kb on + strand, within SO0389 at 403.801 kb on + strand, within SO0389 at 403.801 kb on + strand, within SO0389 at 403.919 kb on + strand, within SO0390 at 403.926 kb on + strand, within SO0390 at 403.926 kb on + strand, within SO0390 at 403.934 kb on - strand, within SO0390 at 403.945 kb on - strand, within SO0390 at 403.946 kb on + strand, within SO0390 at 403.946 kb on + strand, within SO0390 at 403.946 kb on + strand, within SO0390 at 403.954 kb on - strand, within SO0390 at 403.954 kb on - strand, within SO0390 at 404.014 kb on - strand, within SO0390 at 404.016 kb on + strand, within SO0390 at 404.042 kb on + strand, within SO0390 at 404.052 kb on + strand, within SO0390 at 404.064 kb on + strand, within SO0390 at 404.079 kb on + strand, within SO0390 at 404.079 kb on + strand, within SO0390 at 404.079 kb on + strand, within SO0390 at 404.079 kb on + strand, within SO0390 at 404.079 kb on + strand, within SO0390 at 404.079 kb on + strand, within SO0390 at 404.079 kb on + strand, within SO0390 at 404.079 kb on + strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.087 kb on - strand, within SO0390 at 404.160 kb on + strand at 404.196 kb on - strand at 404.246 kb on + strand at 404.256 kb on + strand at 404.263 kb on + strand at 404.263 kb on + strand at 404.263 kb on + strand at 404.271 kb on - strand at 404.271 kb on - strand at 404.271 kb on - strand at 404.285 kb on - strand at 404.290 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 401,021 + SO0387 0.15 -3.2 401,021 + SO0387 0.15 -2.7 401,039 + SO0387 0.17 -0.1 401,050 + SO0387 0.19 +2.2 401,050 + SO0387 0.19 +0.6 401,126 + SO0387 0.28 -2.3 401,128 - SO0387 0.28 -0.9 401,147 + SO0387 0.30 +2.3 401,155 - SO0387 0.31 +1.2 401,159 + SO0387 0.32 -0.9 401,165 + SO0387 0.33 -0.3 401,165 + SO0387 0.33 +1.2 401,173 - SO0387 0.34 +1.7 401,173 - SO0387 0.34 -1.4 401,173 - SO0387 0.34 +0.3 401,173 - SO0387 0.34 -0.9 401,173 - SO0387 0.34 -0.4 401,173 - SO0387 0.34 -0.8 401,173 - SO0387 0.34 +1.0 401,222 + SO0387 0.40 +0.1 401,230 - +2.7 401,252 - SO0387 0.43 -1.9 401,253 - SO0387 0.43 -0.8 401,309 + SO0387 0.50 +0.1 401,310 + SO0387 0.50 +1.1 401,318 - SO0387 0.51 +0.3 401,318 - SO0387 0.51 +0.2 401,318 - SO0387 0.51 +1.3 401,337 + SO0387 0.53 -0.3 401,369 + SO0387 0.57 +0.4 401,369 + SO0387 0.57 +0.6 401,385 + SO0387 0.59 -1.4 401,393 - SO0387 0.60 -1.5 401,393 - SO0387 0.60 -0.2 401,446 - SO0387 0.67 +0.7 401,463 + SO0387 0.69 -0.7 401,506 + SO0387 0.74 +0.3 401,548 - SO0387 0.79 +1.8 401,548 - SO0387 0.79 -0.5 401,576 - SO0387 0.82 +1.4 401,576 - SO0387 0.82 +0.5 401,614 + SO0387 0.87 +1.1 401,614 + SO0387 0.87 -0.8 401,622 - SO0387 0.88 +0.6 401,622 - SO0387 0.88 +0.4 401,624 - SO0387 0.88 -0.7 401,664 - +1.6 401,675 + +1.9 401,683 + -0.5 401,683 + +1.0 401,683 + -0.9 401,683 - -1.0 401,683 - +1.4 401,739 + +0.5 401,755 + +0.1 402,002 - -0.4 402,109 - +0.5 402,109 - -2.3 402,110 - +1.1 402,114 + -2.2 402,114 + +1.2 402,115 + +1.5 402,123 - +0.6 402,123 - +2.4 402,139 + -1.2 402,139 + +1.8 402,139 + -0.7 402,147 - SO0388 0.11 -1.4 402,147 - SO0388 0.11 -0.9 402,198 + SO0388 0.14 +0.1 402,206 - SO0388 0.15 +0.6 402,267 + SO0388 0.20 -0.0 402,268 + SO0388 0.20 +0.3 402,272 - SO0388 0.20 -0.2 402,317 - SO0388 0.24 +0.8 402,317 - SO0388 0.24 +0.5 402,319 + SO0388 0.24 +2.5 402,327 - SO0388 0.24 +2.0 402,327 - SO0388 0.24 +0.3 402,438 - SO0388 0.33 -1.4 402,445 - SO0388 0.34 +0.1 402,453 - SO0388 0.34 +0.8 402,465 - SO0388 0.35 +0.1 402,514 + SO0388 0.39 +1.6 402,520 + SO0388 0.39 -0.7 402,533 + SO0388 0.40 +1.7 402,613 - SO0388 0.47 +0.3 402,613 - SO0388 0.47 +0.8 402,766 - SO0388 0.59 -0.9 402,830 + SO0388 0.63 -2.3 402,830 + SO0388 0.63 -2.4 402,846 + SO0388 0.65 +0.7 402,924 + SO0388 0.71 +0.7 402,924 + SO0388 0.71 -0.2 402,924 + SO0388 0.71 +1.7 402,924 + SO0388 0.71 +0.5 402,924 + SO0388 0.71 +1.5 402,924 + SO0388 0.71 +0.1 402,924 + SO0388 0.71 +0.6 402,932 - SO0388 0.71 +1.3 402,932 - SO0388 0.71 -0.1 402,932 - SO0388 0.71 +0.1 402,994 + SO0388 0.76 -0.8 402,994 + SO0388 0.76 +0.7 403,036 + SO0388 0.79 +1.1 403,105 + SO0388 0.85 +1.1 403,115 - SO0388 0.86 -0.2 403,214 - +1.1 403,227 - -0.7 403,240 + -0.5 403,240 + +1.0 403,337 + +0.8 403,344 + -0.6 403,344 + -0.4 403,345 - -0.8 403,358 + SO0389 0.12 -0.3 403,371 - SO0389 0.14 +1.7 403,450 + SO0389 0.27 -1.7 403,589 + SO0389 0.50 -1.4 403,608 + SO0389 0.53 +1.7 403,644 + SO0389 0.59 +0.7 403,795 + SO0389 0.83 +0.3 403,801 + SO0389 0.84 +1.4 403,801 + SO0389 0.84 -2.3 403,919 + SO0390 0.13 -0.3 403,926 + SO0390 0.16 +1.6 403,926 + SO0390 0.16 -0.5 403,934 - SO0390 0.18 +2.3 403,945 - SO0390 0.22 +1.4 403,946 + SO0390 0.22 -0.9 403,946 + SO0390 0.22 +1.2 403,946 + SO0390 0.22 -1.7 403,954 - SO0390 0.25 +3.1 403,954 - SO0390 0.25 +0.7 404,014 - SO0390 0.45 -0.3 404,016 + SO0390 0.46 +2.1 404,042 + SO0390 0.54 +1.8 404,052 + SO0390 0.58 +0.4 404,064 + SO0390 0.62 -0.5 404,079 + SO0390 0.67 -2.7 404,079 + SO0390 0.67 -1.0 404,079 + SO0390 0.67 -0.1 404,079 + SO0390 0.67 -0.8 404,079 + SO0390 0.67 -0.9 404,079 + SO0390 0.67 +1.8 404,079 + SO0390 0.67 -0.1 404,079 + SO0390 0.67 -1.2 404,087 - SO0390 0.69 -1.4 404,087 - SO0390 0.69 +1.3 404,087 - SO0390 0.69 +0.7 404,087 - SO0390 0.69 -1.7 404,087 - SO0390 0.69 +0.0 404,087 - SO0390 0.69 +0.9 404,087 - SO0390 0.69 +0.0 404,087 - SO0390 0.69 +0.8 404,087 - SO0390 0.69 +1.8 404,087 - SO0390 0.69 +0.9 404,160 + -0.2 404,196 - -1.4 404,246 + -0.5 404,256 + +0.4 404,263 + +0.7 404,263 + +1.3 404,263 + -0.5 404,271 - +0.7 404,271 - +1.0 404,271 - +1.3 404,285 - -2.8 404,290 + -1.2
Or see this region's nucleotide sequence