Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0384 and SO0386 are separated by 339 nucleotides SO0386 and SO0387 are separated by 107 nucleotides SO0387 and SO0388 are separated by 290 nucleotides
SO0384: SO0384 - hypothetical protein (NCBI ptt file), at 399,550 to 400,200
SO0384
SO0386: SO0386 - DNA-binding protein, putative (NCBI ptt file), at 400,540 to 400,788
SO0386
SO0387: SO0387 - hypothetical protein (NCBI ptt file), at 400,896 to 401,720
SO0387
SO0388: SO0388 - site-specific recombinase, phage integrase family (NCBI ptt file), at 402,011 to 403,300
SO0388
Position (kb) 400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 399.930 kb on - strand, within SO0384 at 399.930 kb on - strand, within SO0384 at 399.930 kb on - strand, within SO0384 at 399.938 kb on + strand, within SO0384 at 399.938 kb on + strand, within SO0384 at 399.985 kb on + strand, within SO0384 at 399.985 kb on + strand, within SO0384 at 399.993 kb on - strand, within SO0384 at 399.993 kb on - strand, within SO0384 at 400.003 kb on - strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.059 kb on - strand, within SO0384 at 400.142 kb on + strand at 400.142 kb on + strand at 400.150 kb on - strand at 400.175 kb on - strand at 400.175 kb on - strand at 400.218 kb on - strand at 400.218 kb on - strand at 400.257 kb on + strand at 400.257 kb on + strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.267 kb on - strand at 400.291 kb on + strand at 400.291 kb on + strand at 400.299 kb on - strand at 400.309 kb on + strand at 400.315 kb on + strand at 400.359 kb on + strand at 400.372 kb on - strand at 400.431 kb on + strand at 400.434 kb on + strand at 400.434 kb on + strand at 400.442 kb on - strand at 400.444 kb on - strand at 400.555 kb on - strand at 400.596 kb on + strand, within SO0386 at 400.602 kb on - strand, within SO0386 at 400.612 kb on - strand, within SO0386 at 400.614 kb on + strand, within SO0386 at 400.622 kb on - strand, within SO0386 at 400.645 kb on - strand, within SO0386 at 400.679 kb on - strand, within SO0386 at 400.687 kb on + strand, within SO0386 at 400.694 kb on + strand, within SO0386 at 400.745 kb on + strand, within SO0386 at 400.810 kb on + strand at 400.810 kb on - strand at 400.817 kb on + strand at 400.825 kb on - strand at 400.885 kb on + strand at 400.907 kb on + strand at 400.959 kb on + strand at 401.008 kb on - strand, within SO0387 at 401.021 kb on + strand, within SO0387 at 401.021 kb on + strand, within SO0387 at 401.039 kb on + strand, within SO0387 at 401.050 kb on + strand, within SO0387 at 401.050 kb on + strand, within SO0387 at 401.126 kb on + strand, within SO0387 at 401.128 kb on - strand, within SO0387 at 401.147 kb on + strand, within SO0387 at 401.155 kb on - strand, within SO0387 at 401.159 kb on + strand, within SO0387 at 401.165 kb on + strand, within SO0387 at 401.165 kb on + strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.222 kb on + strand, within SO0387 at 401.230 kb on - strand at 401.252 kb on - strand, within SO0387 at 401.253 kb on - strand, within SO0387 at 401.309 kb on + strand, within SO0387 at 401.310 kb on + strand, within SO0387 at 401.318 kb on - strand, within SO0387 at 401.318 kb on - strand, within SO0387 at 401.318 kb on - strand, within SO0387 at 401.337 kb on + strand, within SO0387 at 401.369 kb on + strand, within SO0387 at 401.369 kb on + strand, within SO0387 at 401.385 kb on + strand, within SO0387 at 401.393 kb on - strand, within SO0387 at 401.393 kb on - strand, within SO0387 at 401.446 kb on - strand, within SO0387 at 401.463 kb on + strand, within SO0387 at 401.506 kb on + strand, within SO0387 at 401.548 kb on - strand, within SO0387 at 401.548 kb on - strand, within SO0387 at 401.576 kb on - strand, within SO0387 at 401.576 kb on - strand, within SO0387 at 401.614 kb on + strand, within SO0387 at 401.614 kb on + strand, within SO0387 at 401.622 kb on - strand, within SO0387 at 401.622 kb on - strand, within SO0387 at 401.624 kb on - strand, within SO0387 at 401.664 kb on - strand at 401.675 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.683 kb on + strand at 401.683 kb on - strand at 401.683 kb on - strand at 401.739 kb on + strand at 401.755 kb on + strand at 402.002 kb on - strand at 402.109 kb on - strand at 402.109 kb on - strand at 402.110 kb on - strand at 402.114 kb on + strand at 402.114 kb on + strand at 402.115 kb on + strand at 402.123 kb on - strand at 402.123 kb on - strand at 402.139 kb on + strand at 402.139 kb on + strand at 402.139 kb on + strand at 402.147 kb on - strand, within SO0388 at 402.147 kb on - strand, within SO0388 at 402.198 kb on + strand, within SO0388 at 402.206 kb on - strand, within SO0388 at 402.267 kb on + strand, within SO0388 at 402.268 kb on + strand, within SO0388 at 402.272 kb on - strand, within SO0388 at 402.317 kb on - strand, within SO0388 at 402.317 kb on - strand, within SO0388 at 402.319 kb on + strand, within SO0388 at 402.327 kb on - strand, within SO0388 at 402.327 kb on - strand, within SO0388 at 402.438 kb on - strand, within SO0388 at 402.445 kb on - strand, within SO0388 at 402.453 kb on - strand, within SO0388 at 402.465 kb on - strand, within SO0388 at 402.514 kb on + strand, within SO0388 at 402.520 kb on + strand, within SO0388 at 402.533 kb on + strand, within SO0388 at 402.613 kb on - strand, within SO0388 at 402.613 kb on - strand, within SO0388
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 399,930 - SO0384 0.58 +0.1 399,930 - SO0384 0.58 +0.5 399,930 - SO0384 0.58 +0.6 399,938 + SO0384 0.60 +0.6 399,938 + SO0384 0.60 +0.3 399,985 + SO0384 0.67 +2.1 399,985 + SO0384 0.67 +0.8 399,993 - SO0384 0.68 +1.3 399,993 - SO0384 0.68 -0.3 400,003 - SO0384 0.70 +0.8 400,044 + SO0384 0.76 -0.6 400,044 + SO0384 0.76 -0.1 400,044 + SO0384 0.76 -0.1 400,044 + SO0384 0.76 +0.5 400,052 - SO0384 0.77 +1.2 400,052 - SO0384 0.77 -0.4 400,052 - SO0384 0.77 -0.9 400,052 - SO0384 0.77 -2.5 400,052 - SO0384 0.77 +1.1 400,059 - SO0384 0.78 +1.4 400,142 + +0.7 400,142 + +4.5 400,150 - +0.1 400,175 - +1.0 400,175 - +0.3 400,218 - +0.3 400,218 - -1.4 400,257 + +1.5 400,257 + +0.1 400,265 - -0.5 400,265 - -0.4 400,265 - -0.0 400,265 - +0.4 400,265 - -0.1 400,267 - +0.1 400,291 + +1.0 400,291 + -1.0 400,299 - -2.0 400,309 + -1.5 400,315 + -1.2 400,359 + -2.7 400,372 - -0.8 400,431 + -2.3 400,434 + +0.2 400,434 + +1.7 400,442 - +1.0 400,444 - +1.1 400,555 - +1.7 400,596 + SO0386 0.22 +1.3 400,602 - SO0386 0.25 +1.0 400,612 - SO0386 0.29 +0.6 400,614 + SO0386 0.30 +0.4 400,622 - SO0386 0.33 -0.0 400,645 - SO0386 0.42 +0.1 400,679 - SO0386 0.56 +2.1 400,687 + SO0386 0.59 -0.1 400,694 + SO0386 0.62 +0.1 400,745 + SO0386 0.82 +0.1 400,810 + +1.4 400,810 - +0.7 400,817 + +1.2 400,825 - -2.0 400,885 + -1.3 400,907 + +0.1 400,959 + -0.1 401,008 - SO0387 0.14 -1.5 401,021 + SO0387 0.15 -3.2 401,021 + SO0387 0.15 -2.7 401,039 + SO0387 0.17 -0.1 401,050 + SO0387 0.19 +2.2 401,050 + SO0387 0.19 +0.6 401,126 + SO0387 0.28 -2.3 401,128 - SO0387 0.28 -0.9 401,147 + SO0387 0.30 +2.3 401,155 - SO0387 0.31 +1.2 401,159 + SO0387 0.32 -0.9 401,165 + SO0387 0.33 -0.3 401,165 + SO0387 0.33 +1.2 401,173 - SO0387 0.34 +1.7 401,173 - SO0387 0.34 -1.4 401,173 - SO0387 0.34 +0.3 401,173 - SO0387 0.34 -0.9 401,173 - SO0387 0.34 -0.4 401,173 - SO0387 0.34 -0.8 401,173 - SO0387 0.34 +1.0 401,222 + SO0387 0.40 +0.1 401,230 - +2.7 401,252 - SO0387 0.43 -1.9 401,253 - SO0387 0.43 -0.8 401,309 + SO0387 0.50 +0.1 401,310 + SO0387 0.50 +1.1 401,318 - SO0387 0.51 +0.3 401,318 - SO0387 0.51 +0.2 401,318 - SO0387 0.51 +1.3 401,337 + SO0387 0.53 -0.3 401,369 + SO0387 0.57 +0.4 401,369 + SO0387 0.57 +0.6 401,385 + SO0387 0.59 -1.4 401,393 - SO0387 0.60 -1.5 401,393 - SO0387 0.60 -0.2 401,446 - SO0387 0.67 +0.7 401,463 + SO0387 0.69 -0.7 401,506 + SO0387 0.74 +0.3 401,548 - SO0387 0.79 +1.8 401,548 - SO0387 0.79 -0.5 401,576 - SO0387 0.82 +1.4 401,576 - SO0387 0.82 +0.5 401,614 + SO0387 0.87 +1.1 401,614 + SO0387 0.87 -0.8 401,622 - SO0387 0.88 +0.6 401,622 - SO0387 0.88 +0.4 401,624 - SO0387 0.88 -0.7 401,664 - +1.6 401,675 + +1.9 401,683 + -0.5 401,683 + +1.0 401,683 + -0.9 401,683 - -1.0 401,683 - +1.4 401,739 + +0.5 401,755 + +0.1 402,002 - -0.4 402,109 - +0.5 402,109 - -2.3 402,110 - +1.1 402,114 + -2.2 402,114 + +1.2 402,115 + +1.5 402,123 - +0.6 402,123 - +2.4 402,139 + -1.2 402,139 + +1.8 402,139 + -0.7 402,147 - SO0388 0.11 -1.4 402,147 - SO0388 0.11 -0.9 402,198 + SO0388 0.14 +0.1 402,206 - SO0388 0.15 +0.6 402,267 + SO0388 0.20 -0.0 402,268 + SO0388 0.20 +0.3 402,272 - SO0388 0.20 -0.2 402,317 - SO0388 0.24 +0.8 402,317 - SO0388 0.24 +0.5 402,319 + SO0388 0.24 +2.5 402,327 - SO0388 0.24 +2.0 402,327 - SO0388 0.24 +0.3 402,438 - SO0388 0.33 -1.4 402,445 - SO0388 0.34 +0.1 402,453 - SO0388 0.34 +0.8 402,465 - SO0388 0.35 +0.1 402,514 + SO0388 0.39 +1.6 402,520 + SO0388 0.39 -0.7 402,533 + SO0388 0.40 +1.7 402,613 - SO0388 0.47 +0.3 402,613 - SO0388 0.47 +0.8
Or see this region's nucleotide sequence