Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hsdM-1 and SO0384 are separated by 500 nucleotides SO0384 and SO0386 are separated by 339 nucleotides SO0386 and SO0387 are separated by 107 nucleotides
SO0383: hsdM-1 - type I restriction-modification system, M subunit (NCBI ptt file), at 397,292 to 399,049
hsdM-1
SO0384: SO0384 - hypothetical protein (NCBI ptt file), at 399,550 to 400,200
SO0384
SO0386: SO0386 - DNA-binding protein, putative (NCBI ptt file), at 400,540 to 400,788
SO0386
SO0387: SO0387 - hypothetical protein (NCBI ptt file), at 400,896 to 401,720
SO0387
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 398.559 kb on - strand, within hsdM-1 at 398.568 kb on + strand, within hsdM-1 at 398.568 kb on + strand, within hsdM-1 at 398.576 kb on - strand, within hsdM-1 at 398.576 kb on - strand, within hsdM-1 at 398.576 kb on - strand, within hsdM-1 at 398.609 kb on + strand, within hsdM-1 at 398.686 kb on - strand, within hsdM-1 at 398.718 kb on - strand, within hsdM-1 at 398.743 kb on + strand, within hsdM-1 at 398.763 kb on + strand, within hsdM-1 at 398.771 kb on - strand, within hsdM-1 at 398.778 kb on - strand, within hsdM-1 at 398.813 kb on - strand, within hsdM-1 at 398.845 kb on + strand, within hsdM-1 at 398.893 kb on - strand at 398.914 kb on - strand at 398.919 kb on + strand at 399.042 kb on - strand at 399.147 kb on + strand at 399.155 kb on - strand at 399.158 kb on - strand at 399.191 kb on - strand at 399.203 kb on + strand at 399.223 kb on + strand at 399.453 kb on + strand at 399.453 kb on + strand at 399.453 kb on + strand at 399.453 kb on + strand at 399.453 kb on + strand at 399.461 kb on - strand at 399.461 kb on - strand at 399.463 kb on + strand at 399.468 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.488 kb on + strand at 399.496 kb on - strand at 399.496 kb on - strand at 399.496 kb on - strand at 399.496 kb on - strand at 399.600 kb on + strand at 399.656 kb on + strand, within SO0384 at 399.656 kb on + strand, within SO0384 at 399.657 kb on + strand, within SO0384 at 399.657 kb on - strand, within SO0384 at 399.664 kb on - strand, within SO0384 at 399.664 kb on - strand, within SO0384 at 399.664 kb on - strand, within SO0384 at 399.665 kb on - strand, within SO0384 at 399.705 kb on + strand, within SO0384 at 399.747 kb on + strand, within SO0384 at 399.755 kb on - strand, within SO0384 at 399.775 kb on - strand, within SO0384 at 399.795 kb on - strand, within SO0384 at 399.802 kb on + strand, within SO0384 at 399.810 kb on - strand, within SO0384 at 399.865 kb on - strand, within SO0384 at 399.889 kb on + strand, within SO0384 at 399.930 kb on - strand, within SO0384 at 399.930 kb on - strand, within SO0384 at 399.930 kb on - strand, within SO0384 at 399.938 kb on + strand, within SO0384 at 399.938 kb on + strand, within SO0384 at 399.985 kb on + strand, within SO0384 at 399.985 kb on + strand, within SO0384 at 399.993 kb on - strand, within SO0384 at 399.993 kb on - strand, within SO0384 at 400.003 kb on - strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.044 kb on + strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.052 kb on - strand, within SO0384 at 400.059 kb on - strand, within SO0384 at 400.142 kb on + strand at 400.142 kb on + strand at 400.150 kb on - strand at 400.175 kb on - strand at 400.175 kb on - strand at 400.218 kb on - strand at 400.218 kb on - strand at 400.257 kb on + strand at 400.257 kb on + strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.265 kb on - strand at 400.267 kb on - strand at 400.291 kb on + strand at 400.291 kb on + strand at 400.299 kb on - strand at 400.309 kb on + strand at 400.315 kb on + strand at 400.359 kb on + strand at 400.372 kb on - strand at 400.431 kb on + strand at 400.434 kb on + strand at 400.434 kb on + strand at 400.442 kb on - strand at 400.444 kb on - strand at 400.555 kb on - strand at 400.596 kb on + strand, within SO0386 at 400.602 kb on - strand, within SO0386 at 400.612 kb on - strand, within SO0386 at 400.614 kb on + strand, within SO0386 at 400.622 kb on - strand, within SO0386 at 400.645 kb on - strand, within SO0386 at 400.679 kb on - strand, within SO0386 at 400.687 kb on + strand, within SO0386 at 400.694 kb on + strand, within SO0386 at 400.745 kb on + strand, within SO0386 at 400.810 kb on + strand at 400.810 kb on - strand at 400.817 kb on + strand at 400.825 kb on - strand at 400.885 kb on + strand at 400.907 kb on + strand at 400.959 kb on + strand at 401.008 kb on - strand, within SO0387 at 401.021 kb on + strand, within SO0387 at 401.021 kb on + strand, within SO0387 at 401.039 kb on + strand, within SO0387 at 401.050 kb on + strand, within SO0387 at 401.050 kb on + strand, within SO0387 at 401.126 kb on + strand, within SO0387 at 401.128 kb on - strand, within SO0387 at 401.147 kb on + strand, within SO0387 at 401.155 kb on - strand, within SO0387 at 401.159 kb on + strand, within SO0387 at 401.165 kb on + strand, within SO0387 at 401.165 kb on + strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387 at 401.173 kb on - strand, within SO0387
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 398,559 - hsdM-1 SO0383 0.72 -0.0 398,568 + hsdM-1 SO0383 0.73 +0.1 398,568 + hsdM-1 SO0383 0.73 +1.6 398,576 - hsdM-1 SO0383 0.73 +1.3 398,576 - hsdM-1 SO0383 0.73 +1.6 398,576 - hsdM-1 SO0383 0.73 +0.2 398,609 + hsdM-1 SO0383 0.75 +0.0 398,686 - hsdM-1 SO0383 0.79 -1.3 398,718 - hsdM-1 SO0383 0.81 +1.6 398,743 + hsdM-1 SO0383 0.83 -1.2 398,763 + hsdM-1 SO0383 0.84 +0.4 398,771 - hsdM-1 SO0383 0.84 +2.1 398,778 - hsdM-1 SO0383 0.85 +0.8 398,813 - hsdM-1 SO0383 0.87 -0.4 398,845 + hsdM-1 SO0383 0.88 +1.8 398,893 - +0.3 398,914 - +0.1 398,919 + +2.0 399,042 - +2.1 399,147 + -0.5 399,155 - +1.7 399,158 - +1.4 399,191 - -1.1 399,203 + -0.4 399,223 + +1.5 399,453 + -0.9 399,453 + -0.2 399,453 + +2.6 399,453 + -1.4 399,453 + +0.1 399,461 - +3.1 399,461 - -0.1 399,463 + +0.5 399,468 + +0.6 399,488 + +1.1 399,488 + +0.6 399,488 + +0.1 399,488 + +0.3 399,488 + +0.8 399,488 + +0.8 399,488 + -0.3 399,488 + +1.6 399,488 + +1.6 399,488 + +0.6 399,488 + -1.4 399,488 + -1.4 399,496 - +0.3 399,496 - +0.1 399,496 - +0.3 399,496 - +2.9 399,600 + +2.4 399,656 + SO0384 0.16 -2.0 399,656 + SO0384 0.16 +0.0 399,657 + SO0384 0.16 -0.0 399,657 - SO0384 0.16 +1.6 399,664 - SO0384 0.18 -0.4 399,664 - SO0384 0.18 -0.3 399,664 - SO0384 0.18 +1.4 399,665 - SO0384 0.18 -0.0 399,705 + SO0384 0.24 +0.4 399,747 + SO0384 0.30 +1.5 399,755 - SO0384 0.31 +0.7 399,775 - SO0384 0.35 -0.4 399,795 - SO0384 0.38 -3.1 399,802 + SO0384 0.39 -2.5 399,810 - SO0384 0.40 -0.4 399,865 - SO0384 0.48 -0.7 399,889 + SO0384 0.52 +2.1 399,930 - SO0384 0.58 +0.1 399,930 - SO0384 0.58 +0.5 399,930 - SO0384 0.58 +0.6 399,938 + SO0384 0.60 +0.6 399,938 + SO0384 0.60 +0.3 399,985 + SO0384 0.67 +2.1 399,985 + SO0384 0.67 +0.8 399,993 - SO0384 0.68 +1.3 399,993 - SO0384 0.68 -0.3 400,003 - SO0384 0.70 +0.8 400,044 + SO0384 0.76 -0.6 400,044 + SO0384 0.76 -0.1 400,044 + SO0384 0.76 -0.1 400,044 + SO0384 0.76 +0.5 400,052 - SO0384 0.77 +1.2 400,052 - SO0384 0.77 -0.4 400,052 - SO0384 0.77 -0.9 400,052 - SO0384 0.77 -2.5 400,052 - SO0384 0.77 +1.1 400,059 - SO0384 0.78 +1.4 400,142 + +0.7 400,142 + +4.5 400,150 - +0.1 400,175 - +1.0 400,175 - +0.3 400,218 - +0.3 400,218 - -1.4 400,257 + +1.5 400,257 + +0.1 400,265 - -0.5 400,265 - -0.4 400,265 - -0.0 400,265 - +0.4 400,265 - -0.1 400,267 - +0.1 400,291 + +1.0 400,291 + -1.0 400,299 - -2.0 400,309 + -1.5 400,315 + -1.2 400,359 + -2.7 400,372 - -0.8 400,431 + -2.3 400,434 + +0.2 400,434 + +1.7 400,442 - +1.0 400,444 - +1.1 400,555 - +1.7 400,596 + SO0386 0.22 +1.3 400,602 - SO0386 0.25 +1.0 400,612 - SO0386 0.29 +0.6 400,614 + SO0386 0.30 +0.4 400,622 - SO0386 0.33 -0.0 400,645 - SO0386 0.42 +0.1 400,679 - SO0386 0.56 +2.1 400,687 + SO0386 0.59 -0.1 400,694 + SO0386 0.62 +0.1 400,745 + SO0386 0.82 +0.1 400,810 + +1.4 400,810 - +0.7 400,817 + +1.2 400,825 - -2.0 400,885 + -1.3 400,907 + +0.1 400,959 + -0.1 401,008 - SO0387 0.14 -1.5 401,021 + SO0387 0.15 -3.2 401,021 + SO0387 0.15 -2.7 401,039 + SO0387 0.17 -0.1 401,050 + SO0387 0.19 +2.2 401,050 + SO0387 0.19 +0.6 401,126 + SO0387 0.28 -2.3 401,128 - SO0387 0.28 -0.9 401,147 + SO0387 0.30 +2.3 401,155 - SO0387 0.31 +1.2 401,159 + SO0387 0.32 -0.9 401,165 + SO0387 0.33 -0.3 401,165 + SO0387 0.33 +1.2 401,173 - SO0387 0.34 +1.7 401,173 - SO0387 0.34 -1.4 401,173 - SO0387 0.34 +0.3 401,173 - SO0387 0.34 -0.9 401,173 - SO0387 0.34 -0.4 401,173 - SO0387 0.34 -0.8 401,173 - SO0387 0.34 +1.0
Or see this region's nucleotide sequence