Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0352 and SO0353 are separated by 87 nucleotides SO0353 and SO0354 are separated by 185 nucleotides SO0354 and SO0355 are separated by 170 nucleotides
SO0352: SO0352 - sensor histidine kinase, putative (NCBI ptt file), at 359,174 to 360,253
SO0352
SO0353: SO0353 - TPR domain protein (NCBI ptt file), at 360,341 to 361,039
SO0353
SO0354: SO0354 - sodium/calcium exchanger (NCBI ptt file), at 361,225 to 362,175
SO0354
SO0355: SO0355 - AMP-binding protein (NCBI ptt file), at 362,346 to 364,010
SO0355
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 360.480 kb on + strand, within SO0353 at 360.480 kb on + strand, within SO0353 at 360.480 kb on + strand, within SO0353 at 360.486 kb on + strand, within SO0353 at 360.487 kb on + strand, within SO0353 at 360.487 kb on + strand, within SO0353 at 360.488 kb on - strand, within SO0353 at 360.488 kb on - strand, within SO0353 at 360.513 kb on + strand, within SO0353 at 360.526 kb on - strand, within SO0353 at 360.596 kb on + strand, within SO0353 at 360.602 kb on - strand, within SO0353 at 360.670 kb on - strand, within SO0353 at 360.691 kb on + strand, within SO0353 at 360.691 kb on + strand, within SO0353 at 360.906 kb on - strand, within SO0353 at 361.004 kb on - strand at 361.014 kb on + strand at 361.024 kb on + strand at 361.030 kb on - strand at 361.030 kb on - strand at 361.116 kb on + strand at 361.202 kb on + strand at 361.203 kb on + strand at 361.211 kb on - strand at 361.211 kb on - strand at 361.228 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.291 kb on - strand at 361.291 kb on - strand at 361.291 kb on - strand at 361.291 kb on - strand at 361.318 kb on + strand at 361.318 kb on + strand at 361.318 kb on + strand at 361.318 kb on + strand at 361.326 kb on - strand, within SO0354 at 361.326 kb on - strand, within SO0354 at 361.326 kb on - strand, within SO0354 at 361.340 kb on + strand, within SO0354 at 361.353 kb on + strand, within SO0354 at 361.353 kb on + strand, within SO0354 at 361.385 kb on - strand, within SO0354 at 361.385 kb on - strand, within SO0354 at 361.385 kb on - strand, within SO0354 at 361.409 kb on + strand, within SO0354 at 361.497 kb on - strand, within SO0354 at 361.497 kb on - strand, within SO0354 at 361.666 kb on + strand, within SO0354 at 361.669 kb on - strand, within SO0354 at 361.758 kb on - strand, within SO0354 at 361.829 kb on + strand, within SO0354 at 361.837 kb on - strand, within SO0354 at 361.837 kb on - strand, within SO0354 at 361.927 kb on + strand, within SO0354 at 361.935 kb on - strand, within SO0354 at 361.981 kb on + strand, within SO0354 at 361.995 kb on - strand, within SO0354 at 362.049 kb on + strand, within SO0354 at 362.064 kb on - strand, within SO0354 at 362.086 kb on - strand at 362.096 kb on - strand at 362.110 kb on + strand at 362.184 kb on + strand at 362.192 kb on - strand at 362.232 kb on - strand at 362.243 kb on + strand at 362.295 kb on + strand at 362.303 kb on - strand at 362.303 kb on - strand at 362.303 kb on - strand at 362.394 kb on + strand at 362.394 kb on - strand at 362.394 kb on - strand at 362.552 kb on - strand, within SO0355 at 362.585 kb on + strand, within SO0355 at 362.612 kb on + strand, within SO0355 at 362.636 kb on + strand, within SO0355 at 362.712 kb on + strand, within SO0355 at 362.712 kb on + strand, within SO0355 at 362.728 kb on + strand, within SO0355 at 362.798 kb on - strand, within SO0355 at 362.878 kb on - strand, within SO0355 at 362.906 kb on - strand, within SO0355 at 362.906 kb on - strand, within SO0355 at 362.931 kb on - strand, within SO0355 at 362.932 kb on + strand, within SO0355 at 362.933 kb on + strand, within SO0355 at 362.935 kb on - strand, within SO0355 at 362.940 kb on - strand, within SO0355 at 362.940 kb on - strand, within SO0355 at 363.007 kb on + strand, within SO0355 at 363.024 kb on + strand, within SO0355 at 363.037 kb on - strand, within SO0355 at 363.037 kb on - strand, within SO0355 at 363.037 kb on - strand, within SO0355 at 363.077 kb on + strand, within SO0355 at 363.115 kb on - strand, within SO0355 at 363.116 kb on - strand, within SO0355 at 363.116 kb on - strand, within SO0355 at 363.116 kb on - strand, within SO0355 at 363.144 kb on + strand, within SO0355
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 360,480 + SO0353 0.20 +2.1 360,480 + SO0353 0.20 +0.4 360,480 + SO0353 0.20 +0.3 360,486 + SO0353 0.21 +0.3 360,487 + SO0353 0.21 +0.4 360,487 + SO0353 0.21 +0.1 360,488 - SO0353 0.21 +0.4 360,488 - SO0353 0.21 -1.1 360,513 + SO0353 0.25 +1.5 360,526 - SO0353 0.26 +0.9 360,596 + SO0353 0.36 +1.5 360,602 - SO0353 0.37 -1.8 360,670 - SO0353 0.47 +1.2 360,691 + SO0353 0.50 -0.7 360,691 + SO0353 0.50 +0.8 360,906 - SO0353 0.81 +1.3 361,004 - +0.5 361,014 + +1.3 361,024 + +1.8 361,030 - +0.3 361,030 - -3.4 361,116 + +0.1 361,202 + -0.7 361,203 + +0.8 361,211 - +1.6 361,211 - -2.5 361,228 + -2.1 361,283 + +1.4 361,283 + -1.3 361,283 + +1.7 361,283 + +1.0 361,283 + +1.3 361,283 + +2.7 361,283 + +2.8 361,283 + +1.1 361,291 - +0.4 361,291 - +1.0 361,291 - +1.3 361,291 - -0.9 361,318 + -0.3 361,318 + +0.3 361,318 + +2.0 361,318 + +0.5 361,326 - SO0354 0.11 -1.5 361,326 - SO0354 0.11 +0.0 361,326 - SO0354 0.11 +0.2 361,340 + SO0354 0.12 -1.1 361,353 + SO0354 0.13 +1.1 361,353 + SO0354 0.13 -0.1 361,385 - SO0354 0.17 -1.0 361,385 - SO0354 0.17 +1.4 361,385 - SO0354 0.17 -0.2 361,409 + SO0354 0.19 +0.5 361,497 - SO0354 0.29 +1.2 361,497 - SO0354 0.29 -0.9 361,666 + SO0354 0.46 -0.8 361,669 - SO0354 0.47 -2.8 361,758 - SO0354 0.56 -0.6 361,829 + SO0354 0.64 -0.9 361,837 - SO0354 0.64 -2.5 361,837 - SO0354 0.64 +0.5 361,927 + SO0354 0.74 +0.8 361,935 - SO0354 0.75 +1.0 361,981 + SO0354 0.79 +7.9 361,995 - SO0354 0.81 +1.4 362,049 + SO0354 0.87 -1.2 362,064 - SO0354 0.88 +0.3 362,086 - -2.0 362,096 - -0.7 362,110 + -0.9 362,184 + +0.2 362,192 - -0.1 362,232 - -1.1 362,243 + -1.4 362,295 + -2.2 362,303 - -0.6 362,303 - +2.8 362,303 - -2.1 362,394 + +1.2 362,394 - -0.6 362,394 - +1.5 362,552 - SO0355 0.12 -1.3 362,585 + SO0355 0.14 +0.4 362,612 + SO0355 0.16 +2.7 362,636 + SO0355 0.17 -0.3 362,712 + SO0355 0.22 -1.4 362,712 + SO0355 0.22 +2.4 362,728 + SO0355 0.23 +0.4 362,798 - SO0355 0.27 +0.3 362,878 - SO0355 0.32 +1.2 362,906 - SO0355 0.34 +1.9 362,906 - SO0355 0.34 +0.5 362,931 - SO0355 0.35 -1.4 362,932 + SO0355 0.35 +1.3 362,933 + SO0355 0.35 -2.9 362,935 - SO0355 0.35 +0.4 362,940 - SO0355 0.36 +1.0 362,940 - SO0355 0.36 +0.8 363,007 + SO0355 0.40 +2.0 363,024 + SO0355 0.41 -1.1 363,037 - SO0355 0.42 +0.8 363,037 - SO0355 0.42 -2.3 363,037 - SO0355 0.42 +2.7 363,077 + SO0355 0.44 +0.3 363,115 - SO0355 0.46 +0.1 363,116 - SO0355 0.46 -2.7 363,116 - SO0355 0.46 -0.7 363,116 - SO0355 0.46 +1.9 363,144 + SO0355 0.48 +0.9
Or see this region's nucleotide sequence