Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0352 and SO0353 are separated by 87 nucleotides SO0353 and SO0354 are separated by 185 nucleotides
SO0352: SO0352 - sensor histidine kinase, putative (NCBI ptt file), at 359,174 to 360,253
SO0352
SO0353: SO0353 - TPR domain protein (NCBI ptt file), at 360,341 to 361,039
SO0353
SO0354: SO0354 - sodium/calcium exchanger (NCBI ptt file), at 361,225 to 362,175
SO0354
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 359.341 kb on + strand, within SO0352 at 359.458 kb on - strand, within SO0352 at 359.479 kb on + strand, within SO0352 at 359.579 kb on + strand, within SO0352 at 359.617 kb on - strand, within SO0352 at 359.625 kb on - strand, within SO0352 at 359.707 kb on - strand, within SO0352 at 359.848 kb on + strand, within SO0352 at 359.856 kb on + strand, within SO0352 at 359.958 kb on - strand, within SO0352 at 359.966 kb on - strand, within SO0352 at 359.998 kb on - strand, within SO0352 at 360.017 kb on + strand, within SO0352 at 360.043 kb on - strand, within SO0352 at 360.165 kb on + strand at 360.480 kb on + strand, within SO0353 at 360.480 kb on + strand, within SO0353 at 360.480 kb on + strand, within SO0353 at 360.486 kb on + strand, within SO0353 at 360.487 kb on + strand, within SO0353 at 360.487 kb on + strand, within SO0353 at 360.488 kb on - strand, within SO0353 at 360.488 kb on - strand, within SO0353 at 360.513 kb on + strand, within SO0353 at 360.526 kb on - strand, within SO0353 at 360.596 kb on + strand, within SO0353 at 360.602 kb on - strand, within SO0353 at 360.670 kb on - strand, within SO0353 at 360.691 kb on + strand, within SO0353 at 360.691 kb on + strand, within SO0353 at 360.906 kb on - strand, within SO0353 at 361.004 kb on - strand at 361.014 kb on + strand at 361.024 kb on + strand at 361.030 kb on - strand at 361.030 kb on - strand at 361.116 kb on + strand at 361.202 kb on + strand at 361.203 kb on + strand at 361.211 kb on - strand at 361.211 kb on - strand at 361.228 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.283 kb on + strand at 361.291 kb on - strand at 361.291 kb on - strand at 361.291 kb on - strand at 361.291 kb on - strand at 361.318 kb on + strand at 361.318 kb on + strand at 361.318 kb on + strand at 361.318 kb on + strand at 361.326 kb on - strand, within SO0354 at 361.326 kb on - strand, within SO0354 at 361.326 kb on - strand, within SO0354 at 361.340 kb on + strand, within SO0354 at 361.353 kb on + strand, within SO0354 at 361.353 kb on + strand, within SO0354 at 361.385 kb on - strand, within SO0354 at 361.385 kb on - strand, within SO0354 at 361.385 kb on - strand, within SO0354 at 361.409 kb on + strand, within SO0354 at 361.497 kb on - strand, within SO0354 at 361.497 kb on - strand, within SO0354 at 361.666 kb on + strand, within SO0354 at 361.669 kb on - strand, within SO0354 at 361.758 kb on - strand, within SO0354 at 361.829 kb on + strand, within SO0354 at 361.837 kb on - strand, within SO0354 at 361.837 kb on - strand, within SO0354 at 361.927 kb on + strand, within SO0354 at 361.935 kb on - strand, within SO0354 at 361.981 kb on + strand, within SO0354 at 361.995 kb on - strand, within SO0354
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 359,341 + SO0352 0.15 -0.5 359,458 - SO0352 0.26 +1.1 359,479 + SO0352 0.28 -0.4 359,579 + SO0352 0.38 +0.2 359,617 - SO0352 0.41 +1.2 359,625 - SO0352 0.42 +1.1 359,707 - SO0352 0.49 -0.2 359,848 + SO0352 0.62 +1.6 359,856 + SO0352 0.63 -1.6 359,958 - SO0352 0.73 -1.0 359,966 - SO0352 0.73 -1.6 359,998 - SO0352 0.76 -1.1 360,017 + SO0352 0.78 +1.3 360,043 - SO0352 0.80 +0.5 360,165 + -1.1 360,480 + SO0353 0.20 +2.1 360,480 + SO0353 0.20 +0.4 360,480 + SO0353 0.20 +0.3 360,486 + SO0353 0.21 +0.3 360,487 + SO0353 0.21 +0.4 360,487 + SO0353 0.21 +0.1 360,488 - SO0353 0.21 +0.4 360,488 - SO0353 0.21 -1.1 360,513 + SO0353 0.25 +1.5 360,526 - SO0353 0.26 +0.9 360,596 + SO0353 0.36 +1.5 360,602 - SO0353 0.37 -1.8 360,670 - SO0353 0.47 +1.2 360,691 + SO0353 0.50 -0.7 360,691 + SO0353 0.50 +0.8 360,906 - SO0353 0.81 +1.3 361,004 - +0.5 361,014 + +1.3 361,024 + +1.8 361,030 - +0.3 361,030 - -3.4 361,116 + +0.1 361,202 + -0.7 361,203 + +0.8 361,211 - +1.6 361,211 - -2.5 361,228 + -2.1 361,283 + +1.4 361,283 + -1.3 361,283 + +1.7 361,283 + +1.0 361,283 + +1.3 361,283 + +2.7 361,283 + +2.8 361,283 + +1.1 361,291 - +0.4 361,291 - +1.0 361,291 - +1.3 361,291 - -0.9 361,318 + -0.3 361,318 + +0.3 361,318 + +2.0 361,318 + +0.5 361,326 - SO0354 0.11 -1.5 361,326 - SO0354 0.11 +0.0 361,326 - SO0354 0.11 +0.2 361,340 + SO0354 0.12 -1.1 361,353 + SO0354 0.13 +1.1 361,353 + SO0354 0.13 -0.1 361,385 - SO0354 0.17 -1.0 361,385 - SO0354 0.17 +1.4 361,385 - SO0354 0.17 -0.2 361,409 + SO0354 0.19 +0.5 361,497 - SO0354 0.29 +1.2 361,497 - SO0354 0.29 -0.9 361,666 + SO0354 0.46 -0.8 361,669 - SO0354 0.47 -2.8 361,758 - SO0354 0.56 -0.6 361,829 + SO0354 0.64 -0.9 361,837 - SO0354 0.64 -2.5 361,837 - SO0354 0.64 +0.5 361,927 + SO0354 0.74 +0.8 361,935 - SO0354 0.75 +1.0 361,981 + SO0354 0.79 +7.9 361,995 - SO0354 0.81 +1.4
Or see this region's nucleotide sequence