Strain Fitness in Shewanella oneidensis MR-1 around SO0285

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0283 and SO0284 overlap by 1 nucleotidesSO0284 and SO0285 are separated by 21 nucleotidesSO0285 and aroK are separated by 219 nucleotidesaroK and aroB are separated by 5 nucleotides SO0283: SO0283 - type IV pilus biogenesis protein PilO (NCBI ptt file), at 290,410 to 291,030 SO0283 SO0284: SO0284 - type IV pilus biogenesis protein PilP (NCBI ptt file), at 291,030 to 291,545 SO0284 SO0285: SO0285 - type IV pilus biogenesis protein PilQ (NCBI ptt file), at 291,567 to 293,621 SO0285 SO0286: aroK - shikimate kinase (NCBI ptt file), at 293,841 to 294,356 aroK SO0287: aroB - 3-dehydroquinate synthase (NCBI ptt file), at 294,362 to 295,441 aroB Position (kb) 291 292 293 294Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.567 kb on - strand, within SO0283at 290.577 kb on - strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.581 kb on + strand, within SO0283at 290.584 kb on - strand, within SO0283at 290.597 kb on - strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.630 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.631 kb on + strand, within SO0283at 290.637 kb on + strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.638 kb on - strand, within SO0283at 290.639 kb on - strand, within SO0283at 290.642 kb on + strand, within SO0283at 290.650 kb on + strand, within SO0283at 290.731 kb on + strand, within SO0283at 290.733 kb on - strand, within SO0283at 290.760 kb on - strand, within SO0283at 290.766 kb on + strand, within SO0283at 290.766 kb on - strand, within SO0283at 290.825 kb on - strand, within SO0283at 290.846 kb on + strand, within SO0283at 290.860 kb on + strand, within SO0283at 290.861 kb on + strand, within SO0283at 290.868 kb on + strand, within SO0283at 290.869 kb on - strand, within SO0283at 290.876 kb on - strand, within SO0283at 290.894 kb on + strand, within SO0283at 290.932 kb on - strand, within SO0283at 290.958 kb on - strand, within SO0283at 290.967 kb on + strand, within SO0283at 290.967 kb on + strand, within SO0283at 290.975 kb on - strandat 290.975 kb on - strandat 290.975 kb on - strandat 290.975 kb on - strandat 290.987 kb on + strandat 290.987 kb on + strandat 290.995 kb on - strandat 290.995 kb on - strandat 290.995 kb on - strandat 291.000 kb on - strandat 291.037 kb on + strandat 291.043 kb on - strandat 291.043 kb on - strandat 291.059 kb on - strandat 291.093 kb on + strand, within SO0284at 291.094 kb on + strand, within SO0284at 291.099 kb on - strand, within SO0284at 291.101 kb on - strand, within SO0284at 291.117 kb on + strand, within SO0284at 291.135 kb on + strand, within SO0284at 291.135 kb on + strand, within SO0284at 291.137 kb on - strand, within SO0284at 291.148 kb on + strand, within SO0284at 291.161 kb on + strand, within SO0284at 291.173 kb on + strand, within SO0284at 291.192 kb on + strand, within SO0284at 291.196 kb on - strand, within SO0284at 291.205 kb on + strand, within SO0284at 291.205 kb on + strand, within SO0284at 291.213 kb on - strand, within SO0284at 291.263 kb on - strand, within SO0284at 291.263 kb on - strand, within SO0284at 291.354 kb on + strand, within SO0284at 291.362 kb on - strand, within SO0284at 291.362 kb on - strand, within SO0284at 291.389 kb on - strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.391 kb on + strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.399 kb on - strand, within SO0284at 291.408 kb on - strand, within SO0284at 291.408 kb on - strand, within SO0284at 291.413 kb on - strand, within SO0284at 291.413 kb on - strand, within SO0284at 291.418 kb on + strand, within SO0284at 291.418 kb on + strand, within SO0284at 291.418 kb on + strand, within SO0284at 291.436 kb on - strand, within SO0284at 291.491 kb on + strand, within SO0284at 291.492 kb on + strand, within SO0284at 291.498 kb on + strandat 291.498 kb on + strandat 291.498 kb on + strandat 291.500 kb on - strandat 291.500 kb on - strandat 291.502 kb on + strandat 291.505 kb on + strandat 291.505 kb on + strandat 291.505 kb on + strandat 291.505 kb on + strandat 291.505 kb on + strandat 291.510 kb on - strandat 291.513 kb on - strandat 291.513 kb on - strandat 291.513 kb on - strandat 291.554 kb on + strandat 291.555 kb on + strandat 291.562 kb on - strandat 291.609 kb on + strandat 291.610 kb on + strandat 291.630 kb on + strandat 291.630 kb on + strandat 291.638 kb on - strandat 291.671 kb on - strandat 291.683 kb on - strandat 291.708 kb on + strandat 291.729 kb on + strandat 291.735 kb on + strandat 291.776 kb on + strand, within SO0285at 291.784 kb on - strand, within SO0285at 291.800 kb on + strand, within SO0285at 291.801 kb on + strand, within SO0285at 291.801 kb on + strand, within SO0285at 291.801 kb on + strand, within SO0285at 291.873 kb on - strand, within SO0285at 291.913 kb on + strand, within SO0285at 291.913 kb on + strand, within SO0285at 291.913 kb on + strand, within SO0285at 291.921 kb on - strand, within SO0285at 291.962 kb on + strand, within SO0285at 291.962 kb on + strand, within SO0285at 291.962 kb on + strand, within SO0285at 291.962 kb on + strand, within SO0285at 291.964 kb on - strand, within SO0285at 291.964 kb on - strand, within SO0285at 291.964 kb on - strand, within SO0285at 291.964 kb on - strand, within SO0285at 291.970 kb on - strand, within SO0285at 291.970 kb on - strand, within SO0285at 291.970 kb on - strand, within SO0285at 291.970 kb on - strand, within SO0285at 291.997 kb on + strand, within SO0285at 291.997 kb on + strand, within SO0285at 291.997 kb on + strand, within SO0285at 291.997 kb on + strand, within SO0285at 291.997 kb on + strand, within SO0285at 292.030 kb on + strand, within SO0285at 292.099 kb on + strand, within SO0285at 292.104 kb on + strand, within SO0285at 292.107 kb on - strand, within SO0285at 292.112 kb on - strand, within SO0285at 292.114 kb on + strand, within SO0285at 292.117 kb on - strand, within SO0285at 292.117 kb on - strand, within SO0285at 292.122 kb on - strand, within SO0285at 292.144 kb on - strand, within SO0285at 292.148 kb on + strand, within SO0285at 292.151 kb on + strand, within SO0285at 292.157 kb on + strand, within SO0285at 292.159 kb on - strand, within SO0285at 292.199 kb on + strand, within SO0285at 292.223 kb on - strand, within SO0285at 292.265 kb on + strand, within SO0285at 292.286 kb on + strand, within SO0285at 292.291 kb on + strand, within SO0285at 292.343 kb on + strand, within SO0285at 292.343 kb on + strand, within SO0285at 292.343 kb on + strand, within SO0285at 292.351 kb on - strand, within SO0285at 292.351 kb on - strand, within SO0285at 292.351 kb on - strand, within SO0285at 292.351 kb on - strand, within SO0285at 292.353 kb on + strand, within SO0285at 292.353 kb on + strand, within SO0285at 292.370 kb on + strand, within SO0285at 292.422 kb on + strand, within SO0285at 292.422 kb on + strand, within SO0285at 292.422 kb on + strand, within SO0285at 292.430 kb on + strand, within SO0285at 292.430 kb on - strand, within SO0285at 292.438 kb on - strand, within SO0285at 292.438 kb on - strand, within SO0285at 292.449 kb on + strand, within SO0285at 292.457 kb on - strand, within SO0285at 292.459 kb on - strand, within SO0285at 292.476 kb on + strand, within SO0285at 292.511 kb on + strand, within SO0285at 292.529 kb on + strand, within SO0285at 292.628 kb on - strand, within SO0285at 292.636 kb on - strand, within SO0285at 292.664 kb on + strand, within SO0285at 292.672 kb on - strand, within SO0285at 292.672 kb on - strand, within SO0285at 292.672 kb on - strand, within SO0285at 292.716 kb on - strand, within SO0285at 292.740 kb on + strand, within SO0285at 292.759 kb on + strand, within SO0285at 292.768 kb on + strand, within SO0285at 292.778 kb on - strand, within SO0285at 292.781 kb on + strand, within SO0285at 292.781 kb on + strand, within SO0285at 292.781 kb on + strand, within SO0285at 292.781 kb on + strand, within SO0285at 292.789 kb on - strand, within SO0285at 292.789 kb on - strand, within SO0285at 292.802 kb on + strand, within SO0285at 292.845 kb on + strand, within SO0285at 292.877 kb on - strand, within SO0285at 292.890 kb on - strand, within SO0285at 292.917 kb on + strand, within SO0285at 292.928 kb on + strand, within SO0285at 292.934 kb on + strand, within SO0285at 292.939 kb on + strand, within SO0285at 292.939 kb on + strand, within SO0285at 292.960 kb on - strand, within SO0285at 292.965 kb on + strand, within SO0285at 292.983 kb on - strand, within SO0285at 293.071 kb on - strand, within SO0285at 293.123 kb on + strand, within SO0285at 293.131 kb on - strand, within SO0285at 293.159 kb on - strand, within SO0285at 293.199 kb on + strand, within SO0285at 293.211 kb on - strand, within SO0285at 293.211 kb on - strand, within SO0285at 293.293 kb on + strand, within SO0285at 293.360 kb on + strand, within SO0285at 293.360 kb on + strand, within SO0285at 293.360 kb on + strand, within SO0285at 293.360 kb on + strand, within SO0285at 293.368 kb on - strand, within SO0285at 293.368 kb on - strand, within SO0285at 293.457 kb on - strandat 293.555 kb on + strandat 293.582 kb on - strandat 293.616 kb on + strandat 293.616 kb on + strandat 293.624 kb on - strandat 293.624 kb on - strandat 293.624 kb on - strandat 293.750 kb on + strandat 293.755 kb on + strandat 294.416 kb on + strandat 294.495 kb on - strand, within aroBat 294.518 kb on - strand, within aroBat 294.520 kb on + strand, within aroB

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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290,567 - SO0283 0.25 -0.8
290,567 - SO0283 0.25 +0.4
290,567 - SO0283 0.25 -0.7
290,577 - SO0283 0.27 -2.9
290,581 + SO0283 0.28 +0.4
290,581 + SO0283 0.28 +0.8
290,584 - SO0283 0.28 +0.9
290,597 - SO0283 0.30 +0.8
290,630 + SO0283 0.35 +1.3
290,630 + SO0283 0.35 -1.7
290,631 + SO0283 0.36 -0.1
290,631 + SO0283 0.36 +1.0
290,637 + SO0283 0.37 +0.2
290,638 - SO0283 0.37 -2.8
290,638 - SO0283 0.37 -0.3
290,639 - SO0283 0.37 -2.0
290,642 + SO0283 0.37 +1.5
290,650 + SO0283 0.39 +0.3
290,731 + SO0283 0.52 +0.6
290,733 - SO0283 0.52 -2.0
290,760 - SO0283 0.56 +2.2
290,766 + SO0283 0.57 +2.2
290,766 - SO0283 0.57 -1.2
290,825 - SO0283 0.67 -0.4
290,846 + SO0283 0.70 +1.1
290,860 + SO0283 0.72 -0.4
290,861 + SO0283 0.73 -0.1
290,868 + SO0283 0.74 -1.7
290,869 - SO0283 0.74 -2.4
290,876 - SO0283 0.75 -1.0
290,894 + SO0283 0.78 -2.8
290,932 - SO0283 0.84 -1.0
290,958 - SO0283 0.88 +0.7
290,967 + SO0283 0.90 +0.3
290,967 + SO0283 0.90 -1.0
290,975 - +1.4
290,975 - +1.8
290,975 - +1.0
290,975 - +1.1
290,987 + -0.3
290,987 + +0.9
290,995 - -0.3
290,995 - +0.1
290,995 - +2.1
291,000 - +0.4
291,037 + +1.4
291,043 - -0.1
291,043 - +1.7
291,059 - -2.9
291,093 + SO0284 0.12 -1.5
291,094 + SO0284 0.12 +2.2
291,099 - SO0284 0.13 +0.1
291,101 - SO0284 0.14 -0.0
291,117 + SO0284 0.17 -0.0
291,135 + SO0284 0.20 +0.6
291,135 + SO0284 0.20 -3.1
291,137 - SO0284 0.21 -0.1
291,148 + SO0284 0.23 +1.8
291,161 + SO0284 0.25 +1.1
291,173 + SO0284 0.28 +0.2
291,192 + SO0284 0.31 +0.9
291,196 - SO0284 0.32 +1.6
291,205 + SO0284 0.34 +2.2
291,205 + SO0284 0.34 -2.7
291,213 - SO0284 0.35 +0.7
291,263 - SO0284 0.45 +0.5
291,263 - SO0284 0.45 -0.4
291,354 + SO0284 0.63 +0.6
291,362 - SO0284 0.64 +0.2
291,362 - SO0284 0.64 -0.2
291,389 - SO0284 0.70 -2.5
291,391 + SO0284 0.70 +0.8
291,391 + SO0284 0.70 -0.1
291,391 + SO0284 0.70 -0.0
291,391 + SO0284 0.70 +1.4
291,399 - SO0284 0.72 +2.1
291,399 - SO0284 0.72 -2.3
291,399 - SO0284 0.72 +0.1
291,399 - SO0284 0.72 -0.0
291,408 - SO0284 0.73 -1.0
291,408 - SO0284 0.73 +0.3
291,413 - SO0284 0.74 +1.0
291,413 - SO0284 0.74 -0.4
291,418 + SO0284 0.75 +1.7
291,418 + SO0284 0.75 +1.7
291,418 + SO0284 0.75 +0.5
291,436 - SO0284 0.79 -2.0
291,491 + SO0284 0.89 +0.2
291,492 + SO0284 0.90 -2.2
291,498 + -1.5
291,498 + -1.8
291,498 + +0.4
291,500 - +4.0
291,500 - +3.9
291,502 + +1.0
291,505 + -0.7
291,505 + +1.2
291,505 + +1.8
291,505 + +1.9
291,505 + -0.5
291,510 - -0.5
291,513 - +0.1
291,513 - +0.4
291,513 - +1.7
291,554 + +0.6
291,555 + +1.6
291,562 - +2.8
291,609 + -0.2
291,610 + -3.0
291,630 + -0.9
291,630 + -1.0
291,638 - +1.1
291,671 - +0.5
291,683 - +0.3
291,708 + -0.5
291,729 + -0.0
291,735 + +1.2
291,776 + SO0285 0.10 +0.2
291,784 - SO0285 0.11 +0.5
291,800 + SO0285 0.11 +1.2
291,801 + SO0285 0.11 -2.1
291,801 + SO0285 0.11 -1.4
291,801 + SO0285 0.11 -0.8
291,873 - SO0285 0.15 -0.5
291,913 + SO0285 0.17 -2.5
291,913 + SO0285 0.17 -0.9
291,913 + SO0285 0.17 +0.3
291,921 - SO0285 0.17 -2.9
291,962 + SO0285 0.19 +1.2
291,962 + SO0285 0.19 +0.6
291,962 + SO0285 0.19 -1.7
291,962 + SO0285 0.19 -0.1
291,964 - SO0285 0.19 -3.0
291,964 - SO0285 0.19 +2.2
291,964 - SO0285 0.19 +2.5
291,964 - SO0285 0.19 +0.5
291,970 - SO0285 0.20 +1.9
291,970 - SO0285 0.20 +0.8
291,970 - SO0285 0.20 +0.8
291,970 - SO0285 0.20 -1.4
291,997 + SO0285 0.21 -0.6
291,997 + SO0285 0.21 -0.9
291,997 + SO0285 0.21 +2.5
291,997 + SO0285 0.21 -0.6
291,997 + SO0285 0.21 +0.1
292,030 + SO0285 0.23 +1.6
292,099 + SO0285 0.26 -1.0
292,104 + SO0285 0.26 +1.7
292,107 - SO0285 0.26 +1.2
292,112 - SO0285 0.27 +1.0
292,114 + SO0285 0.27 +0.4
292,117 - SO0285 0.27 +1.9
292,117 - SO0285 0.27 +1.0
292,122 - SO0285 0.27 +1.4
292,144 - SO0285 0.28 +1.0
292,148 + SO0285 0.28 +0.4
292,151 + SO0285 0.28 +0.6
292,157 + SO0285 0.29 +1.2
292,159 - SO0285 0.29 +2.1
292,199 + SO0285 0.31 -1.4
292,223 - SO0285 0.32 -1.4
292,265 + SO0285 0.34 -0.0
292,286 + SO0285 0.35 -2.3
292,291 + SO0285 0.35 -0.6
292,343 + SO0285 0.38 +1.3
292,343 + SO0285 0.38 +0.2
292,343 + SO0285 0.38 +0.6
292,351 - SO0285 0.38 +2.4
292,351 - SO0285 0.38 -1.1
292,351 - SO0285 0.38 -2.4
292,351 - SO0285 0.38 -0.1
292,353 + SO0285 0.38 -1.6
292,353 + SO0285 0.38 -1.4
292,370 + SO0285 0.39 +0.9
292,422 + SO0285 0.42 -2.4
292,422 + SO0285 0.42 -0.3
292,422 + SO0285 0.42 -3.5
292,430 + SO0285 0.42 +1.2
292,430 - SO0285 0.42 -2.1
292,438 - SO0285 0.42 +0.7
292,438 - SO0285 0.42 -0.4
292,449 + SO0285 0.43 +1.9
292,457 - SO0285 0.43 -0.1
292,459 - SO0285 0.43 +1.9
292,476 + SO0285 0.44 -0.3
292,511 + SO0285 0.46 +1.5
292,529 + SO0285 0.47 +2.2
292,628 - SO0285 0.52 +0.9
292,636 - SO0285 0.52 +2.3
292,664 + SO0285 0.53 +0.7
292,672 - SO0285 0.54 +1.8
292,672 - SO0285 0.54 -0.5
292,672 - SO0285 0.54 +2.1
292,716 - SO0285 0.56 -0.0
292,740 + SO0285 0.57 -1.5
292,759 + SO0285 0.58 +0.8
292,768 + SO0285 0.58 -0.4
292,778 - SO0285 0.59 -1.3
292,781 + SO0285 0.59 +1.7
292,781 + SO0285 0.59 -2.0
292,781 + SO0285 0.59 +1.9
292,781 + SO0285 0.59 +2.0
292,789 - SO0285 0.59 +1.0
292,789 - SO0285 0.59 -1.0
292,802 + SO0285 0.60 +1.3
292,845 + SO0285 0.62 +1.3
292,877 - SO0285 0.64 -0.7
292,890 - SO0285 0.64 -0.8
292,917 + SO0285 0.66 +1.0
292,928 + SO0285 0.66 -0.3
292,934 + SO0285 0.67 -0.9
292,939 + SO0285 0.67 +2.6
292,939 + SO0285 0.67 -1.6
292,960 - SO0285 0.68 +2.1
292,965 + SO0285 0.68 +1.2
292,983 - SO0285 0.69 +0.5
293,071 - SO0285 0.73 +0.2
293,123 + SO0285 0.76 +2.8
293,131 - SO0285 0.76 +1.1
293,159 - SO0285 0.77 -0.6
293,199 + SO0285 0.79 -2.0
293,211 - SO0285 0.80 +2.2
293,211 - SO0285 0.80 +2.1
293,293 + SO0285 0.84 -2.1
293,360 + SO0285 0.87 +1.1
293,360 + SO0285 0.87 +1.2
293,360 + SO0285 0.87 +1.3
293,360 + SO0285 0.87 -2.0
293,368 - SO0285 0.88 -0.0
293,368 - SO0285 0.88 +0.2
293,457 - +1.1
293,555 + -4.5
293,582 - +1.3
293,616 + +1.7
293,616 + -0.4
293,624 - -0.5
293,624 - +0.2
293,624 - +0.2
293,750 + -2.6
293,755 + -2.8
294,416 + -1.4
294,495 - aroB SO0287 0.12 -1.8
294,518 - aroB SO0287 0.14 -3.3
294,520 + aroB SO0287 0.15 -2.5

Or see this region's nucleotide sequence