Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybbB and selD overlap by 1 nucleotides selD and SO0197 are separated by 96 nucleotides
SO0195: ybbB - ybbB protein (NCBI ptt file), at 204,956 to 206,086
ybbB
SO0196: selD - selenide, water dikinase (NCBI ptt file), at 206,086 to 207,144
selD
SO0197: SO0197 - fatty acid desaturase, family 1 (NCBI ptt file), at 207,241 to 208,347
SO0197
Position (kb) 206
207
208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 205.113 kb on - strand, within ybbB at 205.153 kb on - strand, within ybbB at 205.229 kb on - strand, within ybbB at 205.344 kb on - strand, within ybbB at 205.416 kb on - strand, within ybbB at 205.416 kb on - strand, within ybbB at 205.438 kb on - strand, within ybbB at 205.483 kb on - strand, within ybbB at 205.566 kb on + strand, within ybbB at 205.598 kb on - strand, within ybbB at 205.632 kb on + strand, within ybbB at 205.650 kb on - strand, within ybbB at 205.728 kb on - strand, within ybbB at 205.786 kb on + strand, within ybbB at 205.809 kb on - strand, within ybbB at 205.809 kb on - strand, within ybbB at 205.883 kb on + strand, within ybbB at 205.891 kb on - strand, within ybbB at 205.891 kb on - strand, within ybbB at 206.113 kb on + strand at 206.119 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.121 kb on - strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.159 kb on + strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.167 kb on - strand at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.224 kb on + strand, within selD at 206.232 kb on - strand, within selD at 206.232 kb on - strand, within selD at 206.336 kb on - strand, within selD at 206.391 kb on + strand, within selD at 206.399 kb on - strand, within selD at 206.403 kb on + strand, within selD at 206.431 kb on + strand, within selD at 206.438 kb on - strand, within selD at 206.439 kb on - strand, within selD at 206.439 kb on - strand, within selD at 206.465 kb on + strand, within selD at 206.465 kb on + strand, within selD at 206.465 kb on + strand, within selD at 206.666 kb on + strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.674 kb on - strand, within selD at 206.743 kb on + strand, within selD at 206.751 kb on - strand, within selD at 206.962 kb on + strand, within selD at 206.966 kb on - strand, within selD at 207.113 kb on - strand at 207.126 kb on + strand at 207.189 kb on + strand at 207.244 kb on + strand at 207.361 kb on - strand, within SO0197 at 207.367 kb on + strand, within SO0197 at 207.367 kb on + strand, within SO0197 at 207.375 kb on - strand, within SO0197 at 207.379 kb on + strand, within SO0197 at 207.656 kb on + strand, within SO0197 at 207.656 kb on + strand, within SO0197 at 207.667 kb on + strand, within SO0197 at 207.675 kb on - strand, within SO0197 at 207.675 kb on - strand, within SO0197 at 207.713 kb on + strand, within SO0197 at 207.721 kb on - strand, within SO0197 at 207.721 kb on - strand, within SO0197 at 207.736 kb on - strand, within SO0197 at 207.761 kb on + strand, within SO0197 at 207.767 kb on - strand, within SO0197 at 207.843 kb on - strand, within SO0197 at 207.850 kb on - strand, within SO0197 at 207.868 kb on - strand, within SO0197 at 207.876 kb on + strand, within SO0197 at 207.876 kb on + strand, within SO0197 at 207.933 kb on + strand, within SO0197 at 207.941 kb on - strand, within SO0197 at 207.947 kb on + strand, within SO0197 at 207.955 kb on - strand, within SO0197 at 207.961 kb on - strand, within SO0197 at 208.016 kb on + strand, within SO0197 at 208.024 kb on - strand, within SO0197 at 208.090 kb on + strand, within SO0197
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 205,113 - ybbB SO0195 0.14 -0.1 205,153 - ybbB SO0195 0.17 -0.1 205,229 - ybbB SO0195 0.24 -1.6 205,344 - ybbB SO0195 0.34 -2.5 205,416 - ybbB SO0195 0.41 -0.1 205,416 - ybbB SO0195 0.41 +2.0 205,438 - ybbB SO0195 0.43 -2.3 205,483 - ybbB SO0195 0.47 +2.5 205,566 + ybbB SO0195 0.54 +1.6 205,598 - ybbB SO0195 0.57 +0.3 205,632 + ybbB SO0195 0.60 -0.7 205,650 - ybbB SO0195 0.61 -1.4 205,728 - ybbB SO0195 0.68 -0.3 205,786 + ybbB SO0195 0.73 -0.2 205,809 - ybbB SO0195 0.75 -3.2 205,809 - ybbB SO0195 0.75 -0.3 205,883 + ybbB SO0195 0.82 -0.4 205,891 - ybbB SO0195 0.83 +1.6 205,891 - ybbB SO0195 0.83 -0.1 206,113 + +0.6 206,119 - -0.1 206,121 - +1.0 206,121 - -0.4 206,121 - +2.0 206,121 - +0.4 206,159 + -0.8 206,159 + +1.1 206,159 + +0.4 206,159 + +0.6 206,167 - +0.9 206,167 - +0.5 206,167 - -0.8 206,167 - -3.2 206,167 - +1.4 206,167 - -2.3 206,224 + selD SO0196 0.13 -2.2 206,224 + selD SO0196 0.13 +0.5 206,224 + selD SO0196 0.13 +0.7 206,224 + selD SO0196 0.13 +0.8 206,232 - selD SO0196 0.14 -2.3 206,232 - selD SO0196 0.14 +0.2 206,336 - selD SO0196 0.24 -0.3 206,391 + selD SO0196 0.29 +0.7 206,399 - selD SO0196 0.30 -1.1 206,403 + selD SO0196 0.30 +0.7 206,431 + selD SO0196 0.33 +1.0 206,438 - selD SO0196 0.33 -0.3 206,439 - selD SO0196 0.33 -2.8 206,439 - selD SO0196 0.33 -0.4 206,465 + selD SO0196 0.36 -0.4 206,465 + selD SO0196 0.36 +1.0 206,465 + selD SO0196 0.36 -1.3 206,666 + selD SO0196 0.55 -2.3 206,674 - selD SO0196 0.56 +0.4 206,674 - selD SO0196 0.56 -1.5 206,674 - selD SO0196 0.56 -1.1 206,674 - selD SO0196 0.56 -0.3 206,674 - selD SO0196 0.56 -3.2 206,743 + selD SO0196 0.62 +3.7 206,751 - selD SO0196 0.63 +1.0 206,962 + selD SO0196 0.83 -1.0 206,966 - selD SO0196 0.83 +0.1 207,113 - +1.3 207,126 + +0.7 207,189 + -3.1 207,244 + +3.5 207,361 - SO0197 0.11 +2.0 207,367 + SO0197 0.11 +3.1 207,367 + SO0197 0.11 -0.4 207,375 - SO0197 0.12 +2.8 207,379 + SO0197 0.12 -1.1 207,656 + SO0197 0.37 +0.8 207,656 + SO0197 0.37 +2.4 207,667 + SO0197 0.38 -1.8 207,675 - SO0197 0.39 +0.4 207,675 - SO0197 0.39 -0.4 207,713 + SO0197 0.43 +2.4 207,721 - SO0197 0.43 -0.4 207,721 - SO0197 0.43 +5.0 207,736 - SO0197 0.45 +1.0 207,761 + SO0197 0.47 +2.8 207,767 - SO0197 0.48 +1.7 207,843 - SO0197 0.54 +4.0 207,850 - SO0197 0.55 +2.9 207,868 - SO0197 0.57 +2.7 207,876 + SO0197 0.57 +1.6 207,876 + SO0197 0.57 +0.4 207,933 + SO0197 0.63 +3.0 207,941 - SO0197 0.63 +1.2 207,947 + SO0197 0.64 +4.3 207,955 - SO0197 0.64 +1.6 207,961 - SO0197 0.65 +1.2 208,016 + SO0197 0.70 +1.9 208,024 - SO0197 0.71 +2.1 208,090 + SO0197 0.77 +1.8
Or see this region's nucleotide sequence