Strain Fitness in Shewanella oneidensis MR-1 around SO0188

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0187 and SO0188 are separated by 2 nucleotidesSO0188 and SO0189 are separated by 14 nucleotides SO0187: SO0187 - serine protease, subtilase family (NCBI ptt file), at 190,156 to 191,379 SO0187 SO0188: SO0188 - hypothetical protein (NCBI ptt file), at 191,382 to 192,473 SO0188 SO0189: SO0189 - fibronectin type III domain protein (NCBI ptt file), at 192,488 to 200,056 SO0189 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 190.447 kb on + strand, within SO0187at 190.455 kb on - strand, within SO0187at 190.547 kb on + strand, within SO0187at 190.547 kb on + strand, within SO0187at 190.569 kb on + strand, within SO0187at 190.575 kb on - strand, within SO0187at 190.616 kb on + strand, within SO0187at 190.688 kb on + strand, within SO0187at 190.725 kb on - strand, within SO0187at 190.838 kb on + strand, within SO0187at 190.855 kb on + strand, within SO0187at 190.863 kb on - strand, within SO0187at 190.871 kb on - strand, within SO0187at 190.907 kb on - strand, within SO0187at 190.916 kb on + strand, within SO0187at 190.956 kb on + strand, within SO0187at 190.956 kb on + strand, within SO0187at 190.971 kb on + strand, within SO0187at 190.985 kb on + strand, within SO0187at 191.032 kb on + strand, within SO0187at 191.032 kb on + strand, within SO0187at 191.040 kb on - strand, within SO0187at 191.040 kb on - strand, within SO0187at 191.047 kb on + strand, within SO0187at 191.127 kb on - strand, within SO0187at 191.197 kb on + strand, within SO0187at 191.236 kb on + strand, within SO0187at 191.330 kb on + strandat 191.355 kb on - strandat 191.363 kb on + strandat 191.610 kb on - strand, within SO0188at 191.634 kb on + strand, within SO0188at 191.635 kb on + strand, within SO0188at 191.771 kb on + strand, within SO0188at 191.829 kb on + strand, within SO0188at 191.829 kb on + strand, within SO0188at 191.829 kb on + strand, within SO0188at 191.837 kb on - strand, within SO0188at 191.888 kb on - strand, within SO0188at 191.905 kb on + strand, within SO0188at 191.921 kb on - strand, within SO0188at 191.931 kb on + strand, within SO0188at 191.939 kb on - strand, within SO0188at 191.952 kb on - strand, within SO0188at 191.952 kb on - strand, within SO0188at 192.011 kb on + strand, within SO0188at 192.099 kb on + strand, within SO0188at 192.107 kb on - strand, within SO0188at 192.107 kb on - strand, within SO0188at 192.118 kb on + strand, within SO0188at 192.118 kb on + strand, within SO0188at 192.126 kb on - strand, within SO0188at 192.160 kb on - strand, within SO0188at 192.160 kb on - strand, within SO0188at 192.160 kb on - strand, within SO0188at 192.160 kb on - strand, within SO0188at 192.265 kb on + strand, within SO0188at 192.265 kb on + strand, within SO0188at 192.275 kb on + strand, within SO0188at 192.275 kb on - strand, within SO0188at 192.291 kb on - strandat 192.389 kb on - strandat 192.420 kb on + strandat 192.422 kb on + strandat 192.422 kb on + strandat 192.430 kb on - strandat 192.606 kb on - strandat 192.606 kb on - strandat 192.645 kb on - strandat 192.684 kb on - strandat 193.019 kb on + strandat 193.019 kb on + strandat 193.044 kb on + strandat 193.062 kb on - strandat 193.082 kb on - strandat 193.099 kb on + strandat 193.112 kb on + strandat 193.142 kb on + strandat 193.220 kb on - strandat 193.239 kb on + strandat 193.246 kb on - strand, within SO0189at 193.248 kb on + strand, within SO0189at 193.272 kb on + strand, within SO0189at 193.281 kb on - strand, within SO0189at 193.291 kb on - strand, within SO0189at 193.308 kb on + strand, within SO0189at 193.324 kb on + strand, within SO0189at 193.324 kb on + strand, within SO0189at 193.332 kb on - strand, within SO0189at 193.332 kb on - strand, within SO0189at 193.332 kb on - strand, within SO0189at 193.332 kb on - strand, within SO0189at 193.382 kb on - strand, within SO0189at 193.389 kb on + strand, within SO0189at 193.434 kb on + strand, within SO0189at 193.468 kb on - strand, within SO0189

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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190,447 + SO0187 0.24 -2.0
190,455 - SO0187 0.24 +0.3
190,547 + SO0187 0.32 -1.1
190,547 + SO0187 0.32 -0.7
190,569 + SO0187 0.34 -3.4
190,575 - SO0187 0.34 -0.7
190,616 + SO0187 0.38 +1.2
190,688 + SO0187 0.43 -0.7
190,725 - SO0187 0.46 -0.4
190,838 + SO0187 0.56 +0.3
190,855 + SO0187 0.57 -1.1
190,863 - SO0187 0.58 +0.4
190,871 - SO0187 0.58 -1.5
190,907 - SO0187 0.61 -0.3
190,916 + SO0187 0.62 +0.5
190,956 + SO0187 0.65 +2.5
190,956 + SO0187 0.65 -2.2
190,971 + SO0187 0.67 -0.2
190,985 + SO0187 0.68 -0.5
191,032 + SO0187 0.72 -0.1
191,032 + SO0187 0.72 +1.1
191,040 - SO0187 0.72 +2.5
191,040 - SO0187 0.72 -1.9
191,047 + SO0187 0.73 +0.8
191,127 - SO0187 0.79 +3.1
191,197 + SO0187 0.85 +1.3
191,236 + SO0187 0.88 +0.4
191,330 + -0.6
191,355 - -0.4
191,363 + -2.7
191,610 - SO0188 0.21 +1.1
191,634 + SO0188 0.23 +1.5
191,635 + SO0188 0.23 +0.9
191,771 + SO0188 0.36 -1.1
191,829 + SO0188 0.41 -0.5
191,829 + SO0188 0.41 -0.9
191,829 + SO0188 0.41 +1.4
191,837 - SO0188 0.42 +1.4
191,888 - SO0188 0.46 +2.4
191,905 + SO0188 0.48 +1.6
191,921 - SO0188 0.49 +2.0
191,931 + SO0188 0.50 -2.8
191,939 - SO0188 0.51 -1.7
191,952 - SO0188 0.52 +0.5
191,952 - SO0188 0.52 +2.4
192,011 + SO0188 0.58 +0.0
192,099 + SO0188 0.66 +0.6
192,107 - SO0188 0.66 +0.3
192,107 - SO0188 0.66 -0.3
192,118 + SO0188 0.67 +0.4
192,118 + SO0188 0.67 -1.2
192,126 - SO0188 0.68 -1.3
192,160 - SO0188 0.71 -0.6
192,160 - SO0188 0.71 +1.5
192,160 - SO0188 0.71 +0.7
192,160 - SO0188 0.71 -0.1
192,265 + SO0188 0.81 -2.3
192,265 + SO0188 0.81 -1.7
192,275 + SO0188 0.82 +0.9
192,275 - SO0188 0.82 -2.9
192,291 - +0.3
192,389 - -1.4
192,420 + -0.1
192,422 + +1.6
192,422 + -3.2
192,430 - -0.8
192,606 - +1.4
192,606 - -0.7
192,645 - -2.5
192,684 - +1.4
193,019 + +0.7
193,019 + +2.0
193,044 + -0.5
193,062 - +1.3
193,082 - +1.9
193,099 + +1.4
193,112 + -0.5
193,142 + +1.4
193,220 - -2.1
193,239 + +0.3
193,246 - SO0189 0.10 +0.9
193,248 + SO0189 0.10 +1.2
193,272 + SO0189 0.10 -2.7
193,281 - SO0189 0.10 +2.7
193,291 - SO0189 0.11 -0.9
193,308 + SO0189 0.11 -3.2
193,324 + SO0189 0.11 -0.3
193,324 + SO0189 0.11 -0.7
193,332 - SO0189 0.11 -3.3
193,332 - SO0189 0.11 +0.0
193,332 - SO0189 0.11 +0.3
193,332 - SO0189 0.11 -0.1
193,382 - SO0189 0.12 -3.5
193,389 + SO0189 0.12 +4.3
193,434 + SO0189 0.12 -1.5
193,468 - SO0189 0.13 -1.4

Or see this region's nucleotide sequence