Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt moeA and ftn are separated by 304 nucleotides ftn and SO0140 are separated by 185 nucleotides SO0140 and SO0141 are separated by 76 nucleotides
SO0138: moeA - molybdopterin biosynthesis MoeA protein (NCBI ptt file), at 144,154 to 145,407
moeA
SO0139: ftn - ferritin (NCBI ptt file), at 145,712 to 146,248
ftn
SO0140: SO0140 - hypothetical protein (NCBI ptt file), at 146,434 to 146,529
SO0140
SO0141: SO0141 - sensory box protein (NCBI ptt file), at 146,606 to 149,839
SO0141
Position (kb) 145
146
147 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 144.717 kb on - strand, within moeA at 144.876 kb on + strand, within moeA at 144.876 kb on + strand, within moeA at 144.876 kb on + strand, within moeA at 144.884 kb on - strand, within moeA at 144.900 kb on + strand, within moeA at 144.955 kb on + strand, within moeA at 144.983 kb on + strand, within moeA at 144.991 kb on - strand, within moeA at 144.991 kb on - strand, within moeA at 144.991 kb on - strand, within moeA at 144.991 kb on - strand, within moeA at 144.991 kb on - strand, within moeA at 145.054 kb on + strand, within moeA at 145.054 kb on + strand, within moeA at 145.054 kb on + strand, within moeA at 145.054 kb on + strand, within moeA at 145.060 kb on - strand, within moeA at 145.062 kb on - strand, within moeA at 145.062 kb on - strand, within moeA at 145.112 kb on + strand, within moeA at 145.127 kb on - strand, within moeA at 145.264 kb on - strand, within moeA at 145.292 kb on - strand at 145.310 kb on + strand at 145.320 kb on - strand at 145.322 kb on + strand at 145.322 kb on + strand at 145.325 kb on - strand at 145.325 kb on - strand at 145.330 kb on - strand at 145.345 kb on - strand at 145.413 kb on - strand at 145.464 kb on + strand at 145.464 kb on + strand at 145.472 kb on - strand at 145.472 kb on - strand at 145.475 kb on + strand at 145.475 kb on + strand at 145.485 kb on + strand at 145.485 kb on + strand at 145.485 kb on + strand at 145.493 kb on - strand at 145.656 kb on + strand at 145.658 kb on + strand at 145.658 kb on + strand at 145.725 kb on - strand at 145.778 kb on - strand, within ftn at 145.808 kb on + strand, within ftn at 145.816 kb on - strand, within ftn at 145.816 kb on - strand, within ftn at 145.816 kb on - strand, within ftn at 145.921 kb on - strand, within ftn at 145.948 kb on + strand, within ftn at 146.004 kb on - strand, within ftn at 146.019 kb on + strand, within ftn at 146.330 kb on - strand at 146.330 kb on - strand at 146.611 kb on + strand at 146.657 kb on - strand at 146.667 kb on - strand at 146.725 kb on - strand at 146.736 kb on + strand at 146.812 kb on - strand at 146.939 kb on - strand, within SO0141 at 146.986 kb on + strand, within SO0141 at 146.986 kb on + strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 146.994 kb on - strand, within SO0141 at 147.084 kb on - strand, within SO0141 at 147.084 kb on - strand, within SO0141 at 147.156 kb on + strand, within SO0141 at 147.164 kb on - strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.187 kb on + strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141 at 147.195 kb on - strand, within SO0141
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 144,717 - moeA SO0138 0.45 +1.9 144,876 + moeA SO0138 0.58 +1.4 144,876 + moeA SO0138 0.58 +1.3 144,876 + moeA SO0138 0.58 +1.0 144,884 - moeA SO0138 0.58 -0.9 144,900 + moeA SO0138 0.59 +2.6 144,955 + moeA SO0138 0.64 -0.2 144,983 + moeA SO0138 0.66 +2.6 144,991 - moeA SO0138 0.67 +0.9 144,991 - moeA SO0138 0.67 -2.4 144,991 - moeA SO0138 0.67 +1.7 144,991 - moeA SO0138 0.67 +1.9 144,991 - moeA SO0138 0.67 +1.8 145,054 + moeA SO0138 0.72 +2.5 145,054 + moeA SO0138 0.72 +0.4 145,054 + moeA SO0138 0.72 -2.3 145,054 + moeA SO0138 0.72 +2.3 145,060 - moeA SO0138 0.72 +3.2 145,062 - moeA SO0138 0.72 +1.1 145,062 - moeA SO0138 0.72 +2.3 145,112 + moeA SO0138 0.76 -1.1 145,127 - moeA SO0138 0.78 +2.4 145,264 - moeA SO0138 0.89 -2.0 145,292 - +1.8 145,310 + +1.2 145,320 - +0.6 145,322 + +0.6 145,322 + -1.0 145,325 - +0.9 145,325 - +1.6 145,330 - +0.0 145,345 - +0.1 145,413 - -0.0 145,464 + +1.0 145,464 + +0.4 145,472 - -0.1 145,472 - +0.1 145,475 + +1.0 145,475 + +1.7 145,485 + -0.0 145,485 + +0.7 145,485 + -0.1 145,493 - +0.0 145,656 + -3.0 145,658 + -0.9 145,658 + -0.6 145,725 - -3.0 145,778 - ftn SO0139 0.12 -1.4 145,808 + ftn SO0139 0.18 +1.3 145,816 - ftn SO0139 0.19 +0.3 145,816 - ftn SO0139 0.19 -3.4 145,816 - ftn SO0139 0.19 -3.0 145,921 - ftn SO0139 0.39 -1.8 145,948 + ftn SO0139 0.44 -2.0 146,004 - ftn SO0139 0.54 -2.0 146,019 + ftn SO0139 0.57 -3.8 146,330 - +0.1 146,330 - +0.0 146,611 + -2.1 146,657 - +2.1 146,667 - +1.0 146,725 - -1.0 146,736 + -0.8 146,812 - +2.3 146,939 - SO0141 0.10 -0.3 146,986 + SO0141 0.12 -0.6 146,986 + SO0141 0.12 -1.4 146,994 - SO0141 0.12 -1.5 146,994 - SO0141 0.12 +1.0 146,994 - SO0141 0.12 +1.0 146,994 - SO0141 0.12 +0.1 146,994 - SO0141 0.12 +1.3 147,084 - SO0141 0.15 +1.2 147,084 - SO0141 0.15 +2.3 147,156 + SO0141 0.17 +1.6 147,164 - SO0141 0.17 -1.9 147,187 + SO0141 0.18 +1.2 147,187 + SO0141 0.18 -1.3 147,187 + SO0141 0.18 -0.6 147,187 + SO0141 0.18 -1.9 147,187 + SO0141 0.18 +0.3 147,187 + SO0141 0.18 -1.3 147,195 - SO0141 0.18 -0.4 147,195 - SO0141 0.18 +0.3 147,195 - SO0141 0.18 -0.7 147,195 - SO0141 0.18 -3.0 147,195 - SO0141 0.18 +0.3 147,195 - SO0141 0.18 +3.1 147,195 - SO0141 0.18 +0.7 147,195 - SO0141 0.18 -1.4 147,195 - SO0141 0.18 +1.0 147,195 - SO0141 0.18 -2.0 147,195 - SO0141 0.18 +1.3 147,195 - SO0141 0.18 -0.3 147,195 - SO0141 0.18 +0.6 147,195 - SO0141 0.18 -0.9 147,195 - SO0141 0.18 +0.8 147,195 - SO0141 0.18 -1.5
Or see this region's nucleotide sequence