Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0084 and SO0085 are separated by 375 nucleotides SO0085 and SO0086 are separated by 367 nucleotides SO0086 and SO0087 are separated by 65 nucleotides
SO0084: SO0084 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file), at 95,148 to 95,828
SO0084
SO0085: SO0085 - hypothetical protein (NCBI ptt file), at 96,204 to 96,626
SO0085
SO0086: SO0086 - hypothetical protein (NCBI ptt file), at 96,994 to 97,095
SO0086
SO0087: SO0087 - hypothetical protein (NCBI ptt file), at 97,161 to 97,721
SO0087
Position (kb) 96
97 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 95.316 kb on + strand, within SO0084 at 95.471 kb on + strand, within SO0084 at 95.517 kb on + strand, within SO0084 at 95.541 kb on + strand, within SO0084 at 95.549 kb on - strand, within SO0084 at 95.575 kb on + strand, within SO0084 at 95.575 kb on + strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.606 kb on - strand, within SO0084 at 95.637 kb on + strand, within SO0084 at 95.642 kb on + strand, within SO0084 at 95.645 kb on - strand, within SO0084 at 95.782 kb on - strand at 95.802 kb on + strand at 95.802 kb on + strand at 95.810 kb on - strand at 95.832 kb on - strand at 95.870 kb on + strand at 95.914 kb on + strand at 95.926 kb on + strand at 95.934 kb on - strand at 95.935 kb on - strand at 95.942 kb on + strand at 96.051 kb on - strand at 96.066 kb on - strand at 96.085 kb on - strand at 96.150 kb on + strand at 96.171 kb on + strand at 96.179 kb on - strand at 96.186 kb on + strand at 96.186 kb on + strand at 96.187 kb on - strand at 96.275 kb on + strand, within SO0085 at 96.280 kb on - strand, within SO0085 at 96.285 kb on + strand, within SO0085 at 96.428 kb on + strand, within SO0085 at 96.442 kb on + strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.493 kb on - strand, within SO0085 at 96.533 kb on + strand, within SO0085 at 96.534 kb on + strand, within SO0085 at 96.549 kb on - strand, within SO0085 at 96.556 kb on + strand, within SO0085 at 96.603 kb on + strand at 96.604 kb on + strand at 96.604 kb on + strand at 96.604 kb on + strand at 96.612 kb on - strand at 96.612 kb on - strand at 96.614 kb on + strand at 96.624 kb on - strand at 96.657 kb on + strand at 96.657 kb on + strand at 96.657 kb on + strand at 96.665 kb on - strand at 96.665 kb on - strand at 96.665 kb on - strand at 96.756 kb on - strand at 96.758 kb on - strand at 96.768 kb on + strand at 96.979 kb on + strand at 96.980 kb on - strand at 97.047 kb on + strand, within SO0086 at 97.047 kb on + strand, within SO0086 at 97.138 kb on - strand at 97.141 kb on - strand at 97.158 kb on - strand at 97.196 kb on + strand at 97.205 kb on + strand at 97.384 kb on + strand, within SO0087 at 97.385 kb on - strand, within SO0087 at 97.392 kb on + strand, within SO0087 at 97.423 kb on + strand, within SO0087 at 97.460 kb on + strand, within SO0087 at 97.460 kb on + strand, within SO0087 at 97.460 kb on + strand, within SO0087 at 97.468 kb on - strand, within SO0087 at 97.468 kb on - strand, within SO0087 at 97.468 kb on - strand, within SO0087 at 97.498 kb on + strand, within SO0087 at 97.579 kb on - strand, within SO0087
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 95,316 + SO0084 0.25 -2.4 95,471 + SO0084 0.47 -0.7 95,517 + SO0084 0.54 -1.0 95,541 + SO0084 0.58 -2.8 95,549 - SO0084 0.59 -0.5 95,575 + SO0084 0.63 +0.8 95,575 + SO0084 0.63 +0.3 95,583 - SO0084 0.64 +0.5 95,583 - SO0084 0.64 -0.2 95,583 - SO0084 0.64 -1.0 95,583 - SO0084 0.64 -1.0 95,583 - SO0084 0.64 +0.8 95,606 - SO0084 0.67 -1.0 95,637 + SO0084 0.72 -2.5 95,642 + SO0084 0.73 -0.8 95,645 - SO0084 0.73 -0.1 95,782 - +0.3 95,802 + +0.6 95,802 + +0.3 95,810 - +1.0 95,832 - -1.3 95,870 + -0.3 95,914 + -1.4 95,926 + +0.9 95,934 - +0.2 95,935 - -1.8 95,942 + -0.7 96,051 - +0.4 96,066 - -1.5 96,085 - +0.2 96,150 + -2.6 96,171 + +2.5 96,179 - -0.4 96,186 + +1.2 96,186 + +2.6 96,187 - -0.9 96,275 + SO0085 0.17 +0.4 96,280 - SO0085 0.18 -0.8 96,285 + SO0085 0.19 -0.9 96,428 + SO0085 0.53 -1.3 96,442 + SO0085 0.56 +1.7 96,451 - SO0085 0.58 +0.3 96,451 - SO0085 0.58 -0.8 96,451 - SO0085 0.58 +0.8 96,493 - SO0085 0.68 -1.2 96,533 + SO0085 0.78 -1.1 96,534 + SO0085 0.78 -1.7 96,549 - SO0085 0.82 +0.1 96,556 + SO0085 0.83 -4.0 96,603 + +0.9 96,604 + +1.1 96,604 + +0.6 96,604 + +0.6 96,612 - -0.2 96,612 - +0.1 96,614 + -0.6 96,624 - +0.4 96,657 + -0.7 96,657 + -1.5 96,657 + -0.1 96,665 - -0.1 96,665 - -3.2 96,665 - +0.9 96,756 - +1.2 96,758 - -0.2 96,768 + +0.9 96,979 + +1.3 96,980 - -1.4 97,047 + SO0086 0.52 -0.9 97,047 + SO0086 0.52 -2.0 97,138 - +0.3 97,141 - -0.5 97,158 - +0.4 97,196 + -0.8 97,205 + -2.8 97,384 + SO0087 0.40 -0.0 97,385 - SO0087 0.40 -0.3 97,392 + SO0087 0.41 -1.2 97,423 + SO0087 0.47 -1.5 97,460 + SO0087 0.53 +1.7 97,460 + SO0087 0.53 +1.3 97,460 + SO0087 0.53 -0.2 97,468 - SO0087 0.55 -3.4 97,468 - SO0087 0.55 +0.3 97,468 - SO0087 0.55 +0.3 97,498 + SO0087 0.60 +0.5 97,579 - SO0087 0.75 +0.3
Or see this region's nucleotide sequence