Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0058 and kdpE are separated by 45 nucleotides kdpE and SO0060 are separated by 0 nucleotides SO0060 and SO0061 are separated by 264 nucleotides
SO0058: SO0058 - potassium uptake protein, putative (NCBI ptt file), at 65,662 to 66,360
SO0058
SO0059: kdpE - transcriptional regulatory protein KdpE (NCBI ptt file), at 66,406 to 67,095
kdpE
SO0060: SO0060 - sensor histidine kinase (NCBI ptt file), at 67,096 to 68,142
SO0060
SO0061: SO0061 - lipoprotein, NLP/P60 family (NCBI ptt file), at 68,407 to 68,871
SO0061
Position (kb) 67
68
69 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 66.110 kb on + strand, within SO0058 at 66.132 kb on + strand, within SO0058 at 66.151 kb on + strand, within SO0058 at 66.182 kb on - strand at 66.197 kb on - strand, within SO0058 at 66.288 kb on + strand, within SO0058 at 66.310 kb on + strand at 66.310 kb on + strand at 66.311 kb on - strand at 66.318 kb on - strand at 66.331 kb on + strand at 66.343 kb on - strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.398 kb on - strand at 66.398 kb on - strand at 66.412 kb on - strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.444 kb on - strand at 66.444 kb on - strand at 66.444 kb on - strand at 66.452 kb on + strand at 66.460 kb on + strand at 66.473 kb on + strand at 66.546 kb on + strand, within kdpE at 66.583 kb on - strand, within kdpE at 66.585 kb on - strand, within kdpE at 66.607 kb on - strand, within kdpE at 66.709 kb on - strand, within kdpE at 66.760 kb on - strand, within kdpE at 66.761 kb on - strand, within kdpE at 66.798 kb on + strand, within kdpE at 66.867 kb on + strand, within kdpE at 66.930 kb on + strand, within kdpE at 67.019 kb on - strand, within kdpE at 67.049 kb on - strand at 67.054 kb on + strand at 67.103 kb on - strand at 67.242 kb on - strand, within SO0060 at 67.273 kb on + strand, within SO0060 at 67.292 kb on + strand, within SO0060 at 67.293 kb on - strand, within SO0060 at 67.300 kb on - strand, within SO0060 at 67.310 kb on - strand, within SO0060 at 67.330 kb on - strand, within SO0060 at 67.331 kb on - strand, within SO0060 at 67.345 kb on + strand, within SO0060 at 67.352 kb on + strand, within SO0060 at 67.352 kb on + strand, within SO0060 at 67.393 kb on - strand, within SO0060 at 67.495 kb on - strand, within SO0060 at 67.495 kb on - strand, within SO0060 at 67.497 kb on + strand, within SO0060 at 67.505 kb on - strand, within SO0060 at 67.510 kb on + strand, within SO0060 at 67.510 kb on + strand, within SO0060 at 67.518 kb on - strand, within SO0060 at 67.518 kb on - strand, within SO0060 at 67.518 kb on - strand, within SO0060 at 67.608 kb on + strand, within SO0060 at 67.616 kb on - strand, within SO0060 at 67.616 kb on - strand, within SO0060 at 67.633 kb on + strand, within SO0060 at 67.641 kb on - strand, within SO0060 at 67.649 kb on - strand, within SO0060 at 67.666 kb on - strand, within SO0060 at 67.736 kb on + strand, within SO0060 at 67.773 kb on + strand, within SO0060 at 67.812 kb on + strand, within SO0060 at 67.820 kb on - strand, within SO0060 at 67.820 kb on - strand, within SO0060 at 67.868 kb on + strand, within SO0060 at 67.869 kb on + strand, within SO0060 at 67.933 kb on - strand, within SO0060 at 68.005 kb on - strand, within SO0060 at 68.154 kb on - strand at 68.154 kb on - strand at 68.155 kb on - strand at 68.297 kb on + strand at 68.310 kb on - strand at 68.328 kb on - strand at 68.368 kb on + strand at 68.373 kb on + strand at 68.387 kb on - strand at 68.389 kb on + strand at 68.442 kb on - strand at 68.442 kb on - strand at 68.469 kb on + strand, within SO0061 at 68.469 kb on + strand, within SO0061 at 68.469 kb on + strand, within SO0061 at 68.469 kb on + strand, within SO0061 at 68.469 kb on + strand, within SO0061 at 68.469 kb on + strand, within SO0061 at 68.476 kb on - strand, within SO0061 at 68.477 kb on - strand, within SO0061 at 68.477 kb on - strand, within SO0061 at 68.477 kb on - strand, within SO0061 at 68.477 kb on - strand, within SO0061 at 68.517 kb on + strand, within SO0061 at 68.530 kb on + strand, within SO0061 at 68.565 kb on - strand, within SO0061 at 68.610 kb on - strand, within SO0061 at 68.634 kb on + strand, within SO0061 at 68.644 kb on - strand, within SO0061 at 68.654 kb on + strand, within SO0061 at 68.676 kb on + strand, within SO0061 at 68.741 kb on - strand, within SO0061 at 68.744 kb on + strand, within SO0061 at 68.823 kb on + strand, within SO0061 at 68.823 kb on + strand, within SO0061 at 68.823 kb on + strand, within SO0061 at 68.831 kb on + strand at 68.832 kb on + strand at 68.872 kb on + strand at 68.882 kb on + strand at 68.902 kb on + strand at 68.902 kb on + strand at 68.902 kb on + strand at 68.910 kb on - strand at 68.910 kb on - strand at 68.939 kb on + strand at 68.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 66,110 + SO0058 0.64 -1.0 66,132 + SO0058 0.67 -0.9 66,151 + SO0058 0.70 -0.1 66,182 - +1.3 66,197 - SO0058 0.77 -1.0 66,288 + SO0058 0.90 -3.5 66,310 + -1.9 66,310 + -0.9 66,311 - +0.3 66,318 - -1.8 66,331 + -0.2 66,343 - -1.0 66,390 + -0.6 66,390 + +0.8 66,390 + +1.1 66,390 + -1.3 66,390 + +0.8 66,390 + +0.6 66,390 + -0.1 66,398 - -0.3 66,398 - +0.2 66,412 - +0.8 66,436 + +1.3 66,436 + -0.9 66,436 + -0.2 66,436 + -2.5 66,444 - +2.9 66,444 - +1.5 66,444 - +0.8 66,452 + -0.3 66,460 + -0.0 66,473 + +0.9 66,546 + kdpE SO0059 0.20 -0.1 66,583 - kdpE SO0059 0.26 +1.9 66,585 - kdpE SO0059 0.26 +3.1 66,607 - kdpE SO0059 0.29 +1.8 66,709 - kdpE SO0059 0.44 +1.6 66,760 - kdpE SO0059 0.51 +3.4 66,761 - kdpE SO0059 0.51 -0.1 66,798 + kdpE SO0059 0.57 -0.4 66,867 + kdpE SO0059 0.67 -2.0 66,930 + kdpE SO0059 0.76 +1.6 67,019 - kdpE SO0059 0.89 +0.8 67,049 - -2.0 67,054 + +0.7 67,103 - +1.5 67,242 - SO0060 0.14 -2.4 67,273 + SO0060 0.17 +0.9 67,292 + SO0060 0.19 -0.7 67,293 - SO0060 0.19 -2.3 67,300 - SO0060 0.19 -2.4 67,310 - SO0060 0.20 -0.4 67,330 - SO0060 0.22 -0.8 67,331 - SO0060 0.22 -1.9 67,345 + SO0060 0.24 -1.2 67,352 + SO0060 0.24 +0.1 67,352 + SO0060 0.24 -3.7 67,393 - SO0060 0.28 -1.9 67,495 - SO0060 0.38 -1.3 67,495 - SO0060 0.38 +0.3 67,497 + SO0060 0.38 -1.5 67,505 - SO0060 0.39 -0.7 67,510 + SO0060 0.40 +0.5 67,510 + SO0060 0.40 +1.0 67,518 - SO0060 0.40 +0.5 67,518 - SO0060 0.40 +1.0 67,518 - SO0060 0.40 -1.9 67,608 + SO0060 0.49 -0.2 67,616 - SO0060 0.50 -0.2 67,616 - SO0060 0.50 -2.4 67,633 + SO0060 0.51 +0.7 67,641 - SO0060 0.52 +0.2 67,649 - SO0060 0.53 +2.3 67,666 - SO0060 0.54 +1.3 67,736 + SO0060 0.61 +2.0 67,773 + SO0060 0.65 -0.4 67,812 + SO0060 0.68 -1.8 67,820 - SO0060 0.69 +2.0 67,820 - SO0060 0.69 -2.0 67,868 + SO0060 0.74 -0.3 67,869 + SO0060 0.74 -1.0 67,933 - SO0060 0.80 -0.6 68,005 - SO0060 0.87 +0.8 68,154 - -3.8 68,154 - +0.8 68,155 - +1.3 68,297 + -2.0 68,310 - +1.3 68,328 - -0.1 68,368 + -1.7 68,373 + -1.6 68,387 - -1.2 68,389 + -1.1 68,442 - +0.6 68,442 - +0.8 68,469 + SO0061 0.13 -2.8 68,469 + SO0061 0.13 -1.0 68,469 + SO0061 0.13 +0.4 68,469 + SO0061 0.13 -0.1 68,469 + SO0061 0.13 +2.5 68,469 + SO0061 0.13 -1.0 68,476 - SO0061 0.15 +2.7 68,477 - SO0061 0.15 +1.7 68,477 - SO0061 0.15 +1.4 68,477 - SO0061 0.15 -1.1 68,477 - SO0061 0.15 -0.8 68,517 + SO0061 0.24 -1.1 68,530 + SO0061 0.26 +0.8 68,565 - SO0061 0.34 -2.4 68,610 - SO0061 0.44 -1.1 68,634 + SO0061 0.49 +1.5 68,644 - SO0061 0.51 -0.7 68,654 + SO0061 0.53 -0.8 68,676 + SO0061 0.58 +0.5 68,741 - SO0061 0.72 +1.8 68,744 + SO0061 0.72 -2.6 68,823 + SO0061 0.89 +0.9 68,823 + SO0061 0.89 -0.6 68,823 + SO0061 0.89 -0.3 68,831 + -0.1 68,832 + -0.9 68,872 + -1.4 68,882 + -0.3 68,902 + +1.7 68,902 + -0.5 68,902 + -2.0 68,910 - -0.4 68,910 - +0.6 68,939 + -1.5 68,956 + -1.5
Or see this region's nucleotide sequence