Strain Fitness in Dechlorosoma suillum PS around Dsui_3148

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3146 and Dsui_3147 are separated by 180 nucleotidesDsui_3147 and Dsui_3148 are separated by 135 nucleotidesDsui_3148 and Dsui_3149 are separated by 9 nucleotides Dsui_3146: Dsui_3146 - nucleoside diphosphate kinase, at 3,368,607 to 3,369,035 _3146 Dsui_3147: Dsui_3147 - ferredoxin-like protein, at 3,369,216 to 3,369,500 _3147 Dsui_3148: Dsui_3148 - flavin-dependent dehydrogenase, at 3,369,636 to 3,370,946 _3148 Dsui_3149: Dsui_3149 - electron transfer flavoprotein, alpha subunit, at 3,370,956 to 3,372,038 _3149 Position (kb) 3369 3370 3371Strain fitness (log2 ratio) -2 -1 0 1 2at 3369.163 kb on - strandat 3369.244 kb on - strandat 3369.452 kb on + strandat 3369.568 kb on - strandat 3369.589 kb on - strandat 3369.733 kb on + strandat 3369.741 kb on - strandat 3369.741 kb on - strandat 3369.746 kb on - strandat 3369.793 kb on - strand, within Dsui_3148at 3369.819 kb on + strand, within Dsui_3148at 3369.991 kb on - strand, within Dsui_3148at 3369.991 kb on - strand, within Dsui_3148at 3370.080 kb on + strand, within Dsui_3148at 3370.110 kb on - strand, within Dsui_3148at 3370.128 kb on + strandat 3370.191 kb on - strand, within Dsui_3148at 3370.218 kb on + strandat 3370.226 kb on - strand, within Dsui_3148at 3370.226 kb on - strand, within Dsui_3148at 3370.257 kb on - strand, within Dsui_3148at 3370.285 kb on + strandat 3370.531 kb on + strandat 3370.638 kb on - strand, within Dsui_3148at 3370.869 kb on - strandat 3370.871 kb on + strandat 3370.935 kb on + strandat 3370.970 kb on - strandat 3370.995 kb on + strandat 3371.003 kb on - strandat 3371.205 kb on + strandat 3371.251 kb on + strand, within Dsui_3149at 3371.306 kb on - strand, within Dsui_3149at 3371.435 kb on + strandat 3371.438 kb on - strand, within Dsui_3149at 3371.564 kb on - strand, within Dsui_3149at 3371.663 kb on + strandat 3371.869 kb on - strandat 3371.900 kb on - strand, within Dsui_3149

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
remove
3,369,163 - +0.4
3,369,244 - -0.3
3,369,452 + +1.0
3,369,568 - +0.2
3,369,589 - +0.9
3,369,733 + +0.2
3,369,741 - +1.0
3,369,741 - +2.6
3,369,746 - -2.2
3,369,793 - Dsui_3148 0.12 -0.1
3,369,819 + Dsui_3148 0.14 -1.1
3,369,991 - Dsui_3148 0.27 -0.2
3,369,991 - Dsui_3148 0.27 -0.7
3,370,080 + Dsui_3148 0.34 +0.3
3,370,110 - Dsui_3148 0.36 -0.7
3,370,128 + -0.3
3,370,191 - Dsui_3148 0.42 -0.2
3,370,218 + +2.4
3,370,226 - Dsui_3148 0.45 -0.2
3,370,226 - Dsui_3148 0.45 -0.0
3,370,257 - Dsui_3148 0.47 -0.3
3,370,285 + +0.6
3,370,531 + +2.0
3,370,638 - Dsui_3148 0.76 -0.2
3,370,869 - -0.2
3,370,871 + +0.7
3,370,935 + -0.7
3,370,970 - +0.3
3,370,995 + +0.7
3,371,003 - +0.1
3,371,205 + -1.2
3,371,251 + Dsui_3149 0.27 +0.1
3,371,306 - Dsui_3149 0.32 +0.6
3,371,435 + +1.4
3,371,438 - Dsui_3149 0.45 -0.9
3,371,564 - Dsui_3149 0.56 -0.4
3,371,663 + -0.2
3,371,869 - +0.4
3,371,900 - Dsui_3149 0.87 +0.6

Or see this region's nucleotide sequence