Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3146 and Dsui_3147 are separated by 180 nucleotides Dsui_3147 and Dsui_3148 are separated by 135 nucleotides Dsui_3148 and Dsui_3149 are separated by 9 nucleotides
Dsui_3146: Dsui_3146 - nucleoside diphosphate kinase, at 3,368,607 to 3,369,035
_3146
Dsui_3147: Dsui_3147 - ferredoxin-like protein, at 3,369,216 to 3,369,500
_3147
Dsui_3148: Dsui_3148 - flavin-dependent dehydrogenase, at 3,369,636 to 3,370,946
_3148
Dsui_3149: Dsui_3149 - electron transfer flavoprotein, alpha subunit, at 3,370,956 to 3,372,038
_3149
Position (kb)
3369
3370
3371 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3369.163 kb on - strand at 3369.244 kb on - strand at 3369.452 kb on + strand at 3369.568 kb on - strand at 3369.589 kb on - strand at 3369.733 kb on + strand at 3369.741 kb on - strand at 3369.741 kb on - strand at 3369.746 kb on - strand at 3369.793 kb on - strand, within Dsui_3148 at 3369.819 kb on + strand, within Dsui_3148 at 3369.991 kb on - strand, within Dsui_3148 at 3369.991 kb on - strand, within Dsui_3148 at 3370.080 kb on + strand, within Dsui_3148 at 3370.110 kb on - strand, within Dsui_3148 at 3370.128 kb on + strand at 3370.191 kb on - strand, within Dsui_3148 at 3370.218 kb on + strand at 3370.226 kb on - strand, within Dsui_3148 at 3370.226 kb on - strand, within Dsui_3148 at 3370.257 kb on - strand, within Dsui_3148 at 3370.285 kb on + strand at 3370.531 kb on + strand at 3370.638 kb on - strand, within Dsui_3148 at 3370.869 kb on - strand at 3370.871 kb on + strand at 3370.935 kb on + strand at 3370.970 kb on - strand at 3370.995 kb on + strand at 3371.003 kb on - strand at 3371.205 kb on + strand at 3371.251 kb on + strand, within Dsui_3149 at 3371.306 kb on - strand, within Dsui_3149 at 3371.435 kb on + strand at 3371.438 kb on - strand, within Dsui_3149 at 3371.564 kb on - strand, within Dsui_3149 at 3371.663 kb on + strand at 3371.869 kb on - strand at 3371.900 kb on - strand, within Dsui_3149
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 3,369,163 - +0.4 3,369,244 - -0.3 3,369,452 + +1.0 3,369,568 - +0.2 3,369,589 - +0.9 3,369,733 + +0.2 3,369,741 - +1.0 3,369,741 - +2.6 3,369,746 - -2.2 3,369,793 - Dsui_3148 0.12 -0.1 3,369,819 + Dsui_3148 0.14 -1.1 3,369,991 - Dsui_3148 0.27 -0.2 3,369,991 - Dsui_3148 0.27 -0.7 3,370,080 + Dsui_3148 0.34 +0.3 3,370,110 - Dsui_3148 0.36 -0.7 3,370,128 + -0.3 3,370,191 - Dsui_3148 0.42 -0.2 3,370,218 + +2.4 3,370,226 - Dsui_3148 0.45 -0.2 3,370,226 - Dsui_3148 0.45 -0.0 3,370,257 - Dsui_3148 0.47 -0.3 3,370,285 + +0.6 3,370,531 + +2.0 3,370,638 - Dsui_3148 0.76 -0.2 3,370,869 - -0.2 3,370,871 + +0.7 3,370,935 + -0.7 3,370,970 - +0.3 3,370,995 + +0.7 3,371,003 - +0.1 3,371,205 + -1.2 3,371,251 + Dsui_3149 0.27 +0.1 3,371,306 - Dsui_3149 0.32 +0.6 3,371,435 + +1.4 3,371,438 - Dsui_3149 0.45 -0.9 3,371,564 - Dsui_3149 0.56 -0.4 3,371,663 + -0.2 3,371,869 - +0.4 3,371,900 - Dsui_3149 0.87 +0.6
Or see this region's nucleotide sequence