Strain Fitness in Dechlorosoma suillum PS around Dsui_3020

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3018 and Dsui_3019 are separated by 9 nucleotidesDsui_3019 and Dsui_3020 are separated by 22 nucleotidesDsui_3020 and Dsui_3021 are separated by 57 nucleotidesDsui_3021 and Dsui_3022 overlap by 4 nucleotides Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638 _3018 Dsui_3019: Dsui_3019 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,232,648 to 3,233,433 _3019 Dsui_3020: Dsui_3020 - Protein of unknown function (DUF3124), at 3,233,456 to 3,233,968 _3020 Dsui_3021: Dsui_3021 - putative permease, DMT superfamily, at 3,234,026 to 3,234,913 _3021 Dsui_3022: Dsui_3022 - hypothetical protein, at 3,234,910 to 3,235,074 _3022 Position (kb) 3233 3234Strain fitness (log2 ratio) -1 0 1 2at 3232.505 kb on - strandat 3232.515 kb on + strandat 3232.759 kb on + strand, within Dsui_3019at 3233.019 kb on + strand, within Dsui_3019at 3233.027 kb on - strand, within Dsui_3019at 3233.040 kb on + strand, within Dsui_3019at 3233.048 kb on - strand, within Dsui_3019at 3233.048 kb on - strand, within Dsui_3019at 3233.216 kb on + strand, within Dsui_3019at 3233.239 kb on + strand, within Dsui_3019at 3233.427 kb on + strandat 3233.435 kb on - strandat 3233.435 kb on - strandat 3233.493 kb on - strandat 3233.596 kb on + strand, within Dsui_3020at 3233.663 kb on + strand, within Dsui_3020at 3233.671 kb on - strand, within Dsui_3020at 3233.793 kb on + strand, within Dsui_3020at 3233.890 kb on + strand, within Dsui_3020at 3233.914 kb on + strand, within Dsui_3020at 3233.914 kb on + strand, within Dsui_3020at 3234.166 kb on + strand, within Dsui_3021at 3234.166 kb on + strandat 3234.166 kb on + strand, within Dsui_3021at 3234.180 kb on - strand, within Dsui_3021at 3234.217 kb on - strand, within Dsui_3021at 3234.253 kb on + strand, within Dsui_3021at 3234.266 kb on + strand, within Dsui_3021at 3234.371 kb on + strand, within Dsui_3021at 3234.383 kb on + strandat 3234.421 kb on - strand, within Dsui_3021at 3234.421 kb on - strand, within Dsui_3021at 3234.428 kb on + strand, within Dsui_3021at 3234.454 kb on - strand, within Dsui_3021at 3234.454 kb on - strand, within Dsui_3021at 3234.586 kb on - strandat 3234.594 kb on - strand, within Dsui_3021at 3234.610 kb on - strand, within Dsui_3021at 3234.710 kb on - strand, within Dsui_3021at 3234.740 kb on + strand, within Dsui_3021at 3234.751 kb on + strand, within Dsui_3021at 3234.772 kb on + strand, within Dsui_3021at 3234.779 kb on + strand, within Dsui_3021at 3234.894 kb on + strandat 3234.894 kb on + strandat 3234.902 kb on - strandat 3234.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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3,232,505 - +0.1
3,232,515 + +0.1
3,232,759 + Dsui_3019 0.14 -0.2
3,233,019 + Dsui_3019 0.47 +0.7
3,233,027 - Dsui_3019 0.48 -1.7
3,233,040 + Dsui_3019 0.50 -0.4
3,233,048 - Dsui_3019 0.51 -0.2
3,233,048 - Dsui_3019 0.51 -0.3
3,233,216 + Dsui_3019 0.72 -0.3
3,233,239 + Dsui_3019 0.75 -0.2
3,233,427 + -0.9
3,233,435 - +0.2
3,233,435 - -0.4
3,233,493 - -0.2
3,233,596 + Dsui_3020 0.27 -1.2
3,233,663 + Dsui_3020 0.40 -1.0
3,233,671 - Dsui_3020 0.42 +0.0
3,233,793 + Dsui_3020 0.66 -0.4
3,233,890 + Dsui_3020 0.85 -0.7
3,233,914 + Dsui_3020 0.89 -1.1
3,233,914 + Dsui_3020 0.89 +0.2
3,234,166 + Dsui_3021 0.16 +0.0
3,234,166 + -0.5
3,234,166 + Dsui_3021 0.16 +0.0
3,234,180 - Dsui_3021 0.17 -0.3
3,234,217 - Dsui_3021 0.22 -0.1
3,234,253 + Dsui_3021 0.26 +0.1
3,234,266 + Dsui_3021 0.27 +0.6
3,234,371 + Dsui_3021 0.39 -0.9
3,234,383 + +0.3
3,234,421 - Dsui_3021 0.44 -0.3
3,234,421 - Dsui_3021 0.44 -0.3
3,234,428 + Dsui_3021 0.45 -0.3
3,234,454 - Dsui_3021 0.48 +0.1
3,234,454 - Dsui_3021 0.48 -0.2
3,234,586 - -0.5
3,234,594 - Dsui_3021 0.64 -0.2
3,234,610 - Dsui_3021 0.66 +0.4
3,234,710 - Dsui_3021 0.77 -0.1
3,234,740 + Dsui_3021 0.80 -0.3
3,234,751 + Dsui_3021 0.82 -0.8
3,234,772 + Dsui_3021 0.84 +0.1
3,234,779 + Dsui_3021 0.85 +0.2
3,234,894 + -0.0
3,234,894 + +2.0
3,234,902 - -0.8
3,234,902 - -0.1

Or see this region's nucleotide sequence