Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2802 and Dsui_2803 are separated by 82 nucleotides Dsui_2803 and Dsui_2804 are separated by 42 nucleotides Dsui_2804 and Dsui_2805 are separated by 40 nucleotides Dsui_2805 and Dsui_2806 are separated by 53 nucleotides
Dsui_2802: Dsui_2802 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 2,973,062 to 2,974,330
_2802
Dsui_2803: Dsui_2803 - GGDEF domain-containing protein, at 2,974,413 to 2,974,898
_2803
Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557
_2804
Dsui_2805: Dsui_2805 - EamA-like transporter family, at 2,976,598 to 2,977,467
_2805
Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562
_2806
Position (kb)
2974
2975
2976
2977 Strain fitness (log2 ratio)
-1
0
1
2 at 2974.063 kb on + strand, within Dsui_2802 at 2974.112 kb on + strand, within Dsui_2802 at 2974.181 kb on + strand, within Dsui_2802 at 2974.210 kb on - strand at 2974.257 kb on - strand at 2974.273 kb on + strand at 2974.277 kb on + strand at 2974.290 kb on + strand at 2974.298 kb on - strand at 2974.408 kb on + strand at 2974.534 kb on + strand, within Dsui_2803 at 2974.536 kb on + strand, within Dsui_2803 at 2974.539 kb on - strand at 2974.561 kb on + strand, within Dsui_2803 at 2974.576 kb on + strand, within Dsui_2803 at 2974.603 kb on + strand, within Dsui_2803 at 2974.686 kb on + strand, within Dsui_2803 at 2974.695 kb on + strand, within Dsui_2803 at 2974.763 kb on - strand, within Dsui_2803 at 2974.777 kb on + strand, within Dsui_2803 at 2974.785 kb on - strand, within Dsui_2803 at 2974.785 kb on - strand, within Dsui_2803 at 2974.800 kb on - strand, within Dsui_2803 at 2974.803 kb on + strand, within Dsui_2803 at 2974.805 kb on - strand, within Dsui_2803 at 2974.863 kb on + strand at 2974.865 kb on - strand at 2975.124 kb on - strand, within Dsui_2804 at 2975.145 kb on + strand, within Dsui_2804 at 2975.205 kb on - strand, within Dsui_2804 at 2975.350 kb on + strand at 2975.358 kb on - strand, within Dsui_2804 at 2975.445 kb on + strand, within Dsui_2804 at 2975.445 kb on + strand at 2975.779 kb on + strand at 2975.793 kb on - strand, within Dsui_2804 at 2975.999 kb on - strand, within Dsui_2804 at 2976.163 kb on - strand, within Dsui_2804 at 2976.168 kb on - strand, within Dsui_2804 at 2976.410 kb on + strand at 2976.507 kb on + strand at 2976.537 kb on - strand at 2976.539 kb on + strand at 2976.539 kb on + strand at 2976.819 kb on - strand, within Dsui_2805 at 2976.963 kb on - strand, within Dsui_2805 at 2977.097 kb on - strand, within Dsui_2805 at 2977.433 kb on + strand at 2977.433 kb on + strand at 2977.441 kb on - strand at 2977.441 kb on - strand at 2977.451 kb on - strand at 2977.487 kb on + strand at 2977.490 kb on - strand at 2977.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 2,974,063 + Dsui_2802 0.79 -0.1 2,974,112 + Dsui_2802 0.83 -0.5 2,974,181 + Dsui_2802 0.88 -0.5 2,974,210 - +0.3 2,974,257 - -1.5 2,974,273 + +1.0 2,974,277 + +0.0 2,974,290 + -1.5 2,974,298 - +0.5 2,974,408 + -0.3 2,974,534 + Dsui_2803 0.25 -0.8 2,974,536 + Dsui_2803 0.25 -0.5 2,974,539 - -0.7 2,974,561 + Dsui_2803 0.30 -0.1 2,974,576 + Dsui_2803 0.34 -0.5 2,974,603 + Dsui_2803 0.39 -0.4 2,974,686 + Dsui_2803 0.56 -0.0 2,974,695 + Dsui_2803 0.58 -0.3 2,974,763 - Dsui_2803 0.72 -0.4 2,974,777 + Dsui_2803 0.75 -0.1 2,974,785 - Dsui_2803 0.77 -0.2 2,974,785 - Dsui_2803 0.77 -0.2 2,974,800 - Dsui_2803 0.80 -0.3 2,974,803 + Dsui_2803 0.80 -0.1 2,974,805 - Dsui_2803 0.81 -0.7 2,974,863 + -0.5 2,974,865 - +0.3 2,975,124 - Dsui_2804 0.11 +0.2 2,975,145 + Dsui_2804 0.13 -0.5 2,975,205 - Dsui_2804 0.16 -1.0 2,975,350 + +0.2 2,975,358 - Dsui_2804 0.26 -0.3 2,975,445 + Dsui_2804 0.31 -0.5 2,975,445 + +2.0 2,975,779 + -0.0 2,975,793 - Dsui_2804 0.53 -0.0 2,975,999 - Dsui_2804 0.65 -0.6 2,976,163 - Dsui_2804 0.76 -0.2 2,976,168 - Dsui_2804 0.76 -1.4 2,976,410 + +2.0 2,976,507 + -0.1 2,976,537 - +0.3 2,976,539 + -0.4 2,976,539 + +0.3 2,976,819 - Dsui_2805 0.25 +0.2 2,976,963 - Dsui_2805 0.42 -0.4 2,977,097 - Dsui_2805 0.57 -0.5 2,977,433 + +0.5 2,977,433 + -0.1 2,977,441 - +0.4 2,977,441 - +0.9 2,977,451 - +0.1 2,977,487 + +1.0 2,977,490 - -0.5 2,977,518 - -1.2
Or see this region's nucleotide sequence