Strain Fitness in Dechlorosoma suillum PS around Dsui_2804

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2802 and Dsui_2803 are separated by 82 nucleotidesDsui_2803 and Dsui_2804 are separated by 42 nucleotidesDsui_2804 and Dsui_2805 are separated by 40 nucleotidesDsui_2805 and Dsui_2806 are separated by 53 nucleotides Dsui_2802: Dsui_2802 - flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family, at 2,973,062 to 2,974,330 _2802 Dsui_2803: Dsui_2803 - GGDEF domain-containing protein, at 2,974,413 to 2,974,898 _2803 Dsui_2804: Dsui_2804 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,974,941 to 2,976,557 _2804 Dsui_2805: Dsui_2805 - EamA-like transporter family, at 2,976,598 to 2,977,467 _2805 Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562 _2806 Position (kb) 2974 2975 2976 2977Strain fitness (log2 ratio) -1 0 1 2at 2974.063 kb on + strand, within Dsui_2802at 2974.112 kb on + strand, within Dsui_2802at 2974.181 kb on + strand, within Dsui_2802at 2974.210 kb on - strandat 2974.257 kb on - strandat 2974.273 kb on + strandat 2974.277 kb on + strandat 2974.290 kb on + strandat 2974.298 kb on - strandat 2974.408 kb on + strandat 2974.534 kb on + strand, within Dsui_2803at 2974.536 kb on + strand, within Dsui_2803at 2974.539 kb on - strandat 2974.561 kb on + strand, within Dsui_2803at 2974.576 kb on + strand, within Dsui_2803at 2974.603 kb on + strand, within Dsui_2803at 2974.686 kb on + strand, within Dsui_2803at 2974.695 kb on + strand, within Dsui_2803at 2974.763 kb on - strand, within Dsui_2803at 2974.777 kb on + strand, within Dsui_2803at 2974.785 kb on - strand, within Dsui_2803at 2974.785 kb on - strand, within Dsui_2803at 2974.800 kb on - strand, within Dsui_2803at 2974.803 kb on + strand, within Dsui_2803at 2974.805 kb on - strand, within Dsui_2803at 2974.863 kb on + strandat 2974.865 kb on - strandat 2975.124 kb on - strand, within Dsui_2804at 2975.145 kb on + strand, within Dsui_2804at 2975.205 kb on - strand, within Dsui_2804at 2975.350 kb on + strandat 2975.358 kb on - strand, within Dsui_2804at 2975.445 kb on + strand, within Dsui_2804at 2975.445 kb on + strandat 2975.779 kb on + strandat 2975.793 kb on - strand, within Dsui_2804at 2975.999 kb on - strand, within Dsui_2804at 2976.163 kb on - strand, within Dsui_2804at 2976.168 kb on - strand, within Dsui_2804at 2976.410 kb on + strandat 2976.507 kb on + strandat 2976.537 kb on - strandat 2976.539 kb on + strandat 2976.539 kb on + strandat 2976.819 kb on - strand, within Dsui_2805at 2976.963 kb on - strand, within Dsui_2805at 2977.097 kb on - strand, within Dsui_2805at 2977.433 kb on + strandat 2977.433 kb on + strandat 2977.441 kb on - strandat 2977.441 kb on - strandat 2977.451 kb on - strandat 2977.487 kb on + strandat 2977.490 kb on - strandat 2977.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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2,974,063 + Dsui_2802 0.79 -0.1
2,974,112 + Dsui_2802 0.83 -0.5
2,974,181 + Dsui_2802 0.88 -0.5
2,974,210 - +0.3
2,974,257 - -1.5
2,974,273 + +1.0
2,974,277 + +0.0
2,974,290 + -1.5
2,974,298 - +0.5
2,974,408 + -0.3
2,974,534 + Dsui_2803 0.25 -0.8
2,974,536 + Dsui_2803 0.25 -0.5
2,974,539 - -0.7
2,974,561 + Dsui_2803 0.30 -0.1
2,974,576 + Dsui_2803 0.34 -0.5
2,974,603 + Dsui_2803 0.39 -0.4
2,974,686 + Dsui_2803 0.56 -0.0
2,974,695 + Dsui_2803 0.58 -0.3
2,974,763 - Dsui_2803 0.72 -0.4
2,974,777 + Dsui_2803 0.75 -0.1
2,974,785 - Dsui_2803 0.77 -0.2
2,974,785 - Dsui_2803 0.77 -0.2
2,974,800 - Dsui_2803 0.80 -0.3
2,974,803 + Dsui_2803 0.80 -0.1
2,974,805 - Dsui_2803 0.81 -0.7
2,974,863 + -0.5
2,974,865 - +0.3
2,975,124 - Dsui_2804 0.11 +0.2
2,975,145 + Dsui_2804 0.13 -0.5
2,975,205 - Dsui_2804 0.16 -1.0
2,975,350 + +0.2
2,975,358 - Dsui_2804 0.26 -0.3
2,975,445 + Dsui_2804 0.31 -0.5
2,975,445 + +2.0
2,975,779 + -0.0
2,975,793 - Dsui_2804 0.53 -0.0
2,975,999 - Dsui_2804 0.65 -0.6
2,976,163 - Dsui_2804 0.76 -0.2
2,976,168 - Dsui_2804 0.76 -1.4
2,976,410 + +2.0
2,976,507 + -0.1
2,976,537 - +0.3
2,976,539 + -0.4
2,976,539 + +0.3
2,976,819 - Dsui_2805 0.25 +0.2
2,976,963 - Dsui_2805 0.42 -0.4
2,977,097 - Dsui_2805 0.57 -0.5
2,977,433 + +0.5
2,977,433 + -0.1
2,977,441 - +0.4
2,977,441 - +0.9
2,977,451 - +0.1
2,977,487 + +1.0
2,977,490 - -0.5
2,977,518 - -1.2

Or see this region's nucleotide sequence