Strain Fitness in Dechlorosoma suillum PS around Dsui_2720

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2718 and Dsui_2719 are separated by 186 nucleotidesDsui_2719 and Dsui_2720 are separated by 164 nucleotidesDsui_2720 and Dsui_2721 are separated by 7 nucleotidesDsui_2721 and Dsui_2722 are separated by 6 nucleotides Dsui_2718: Dsui_2718 - polyribonucleotide nucleotidyltransferase, at 2,872,066 to 2,874,189 _2718 Dsui_2719: Dsui_2719 - ribosomal protein S15, at 2,874,376 to 2,874,645 _2719 Dsui_2720: Dsui_2720 - tRNA pseudouridine 55 synthase, at 2,874,810 to 2,875,712 _2720 Dsui_2721: Dsui_2721 - ribosome-binding factor A, at 2,875,720 to 2,876,133 _2721 Dsui_2722: Dsui_2722 - translation initiation factor IF-2, at 2,876,140 to 2,878,932 _2722 Position (kb) 2874 2875 2876Strain fitness (log2 ratio) -2 -1 0 1 2at 2874.240 kb on + strandat 2874.305 kb on - strandat 2874.334 kb on - strandat 2874.807 kb on + strandat 2874.814 kb on - strandat 2874.815 kb on - strandat 2874.815 kb on - strandat 2874.815 kb on - strandat 2874.815 kb on - strandat 2874.852 kb on - strandat 2874.869 kb on + strandat 2874.947 kb on + strand, within Dsui_2720at 2874.950 kb on - strand, within Dsui_2720at 2875.037 kb on - strand, within Dsui_2720at 2875.063 kb on + strand, within Dsui_2720at 2875.063 kb on + strand, within Dsui_2720at 2875.110 kb on + strand, within Dsui_2720at 2875.137 kb on + strandat 2875.145 kb on - strand, within Dsui_2720at 2875.166 kb on + strand, within Dsui_2720at 2875.166 kb on + strand, within Dsui_2720at 2875.399 kb on + strand, within Dsui_2720at 2875.483 kb on + strand, within Dsui_2720at 2875.662 kb on + strandat 2875.731 kb on - strandat 2875.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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2,874,240 + +0.4
2,874,305 - -0.5
2,874,334 - -0.2
2,874,807 + +1.3
2,874,814 - +0.4
2,874,815 - -0.7
2,874,815 - +0.1
2,874,815 - -0.6
2,874,815 - +0.1
2,874,852 - -0.2
2,874,869 + -0.7
2,874,947 + Dsui_2720 0.15 -0.9
2,874,950 - Dsui_2720 0.16 +0.0
2,875,037 - Dsui_2720 0.25 -2.1
2,875,063 + Dsui_2720 0.28 +2.6
2,875,063 + Dsui_2720 0.28 +1.0
2,875,110 + Dsui_2720 0.33 -0.6
2,875,137 + -0.0
2,875,145 - Dsui_2720 0.37 +0.3
2,875,166 + Dsui_2720 0.39 -0.4
2,875,166 + Dsui_2720 0.39 +0.2
2,875,399 + Dsui_2720 0.65 -0.4
2,875,483 + Dsui_2720 0.75 -2.5
2,875,662 + +0.0
2,875,731 - +0.5
2,875,815 + +1.0

Or see this region's nucleotide sequence