Strain Fitness in Dechlorosoma suillum PS around Dsui_2638

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2637 and Dsui_2638 are separated by 80 nucleotidesDsui_2638 and Dsui_2639 are separated by 21 nucleotidesDsui_2639 and Dsui_2640 are separated by 96 nucleotides Dsui_2637: Dsui_2637 - outer membrane protein, at 2,789,813 to 2,791,084 _2637 Dsui_2638: Dsui_2638 - hypothetical protein, at 2,791,165 to 2,791,509 _2638 Dsui_2639: Dsui_2639 - putative metal-binding protein, at 2,791,531 to 2,791,971 _2639 Dsui_2640: Dsui_2640 - Cytochrome c, at 2,792,068 to 2,792,730 _2640 Position (kb) 2791 2792Strain fitness (log2 ratio) -2 -1 0 1 2at 2790.166 kb on - strand, within Dsui_2637at 2790.199 kb on + strand, within Dsui_2637at 2790.220 kb on + strandat 2790.225 kb on + strand, within Dsui_2637at 2790.228 kb on - strand, within Dsui_2637at 2790.228 kb on - strand, within Dsui_2637at 2790.228 kb on - strand, within Dsui_2637at 2790.327 kb on - strand, within Dsui_2637at 2790.327 kb on - strand, within Dsui_2637at 2790.327 kb on - strand, within Dsui_2637at 2790.365 kb on - strand, within Dsui_2637at 2790.365 kb on - strand, within Dsui_2637at 2790.519 kb on - strand, within Dsui_2637at 2790.647 kb on - strand, within Dsui_2637at 2790.695 kb on - strand, within Dsui_2637at 2790.697 kb on + strand, within Dsui_2637at 2790.705 kb on - strand, within Dsui_2637at 2790.946 kb on + strand, within Dsui_2637at 2790.946 kb on + strand, within Dsui_2637at 2790.977 kb on - strandat 2790.987 kb on - strandat 2790.991 kb on - strandat 2791.015 kb on - strandat 2791.135 kb on + strandat 2791.143 kb on + strandat 2791.151 kb on - strandat 2791.210 kb on - strand, within Dsui_2638at 2791.306 kb on + strand, within Dsui_2638at 2791.369 kb on - strand, within Dsui_2638at 2791.369 kb on - strand, within Dsui_2638at 2791.439 kb on + strand, within Dsui_2638at 2791.460 kb on + strand, within Dsui_2638at 2791.503 kb on - strandat 2791.546 kb on + strandat 2791.564 kb on + strandat 2791.604 kb on - strand, within Dsui_2639at 2791.662 kb on - strand, within Dsui_2639at 2791.728 kb on + strand, within Dsui_2639at 2791.773 kb on - strand, within Dsui_2639at 2791.801 kb on - strand, within Dsui_2639at 2791.884 kb on - strand, within Dsui_2639at 2791.928 kb on - strandat 2791.958 kb on - strandat 2791.998 kb on - strandat 2792.011 kb on - strandat 2792.065 kb on + strandat 2792.065 kb on + strandat 2792.073 kb on - strandat 2792.088 kb on + strandat 2792.096 kb on - strandat 2792.096 kb on - strandat 2792.103 kb on - strandat 2792.240 kb on + strand, within Dsui_2640at 2792.256 kb on - strand, within Dsui_2640at 2792.320 kb on + strand, within Dsui_2640at 2792.431 kb on - strand, within Dsui_2640at 2792.436 kb on - strand, within Dsui_2640

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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2,790,166 - Dsui_2637 0.28 -0.5
2,790,199 + Dsui_2637 0.30 -1.6
2,790,220 + -0.0
2,790,225 + Dsui_2637 0.32 -1.0
2,790,228 - Dsui_2637 0.33 +0.1
2,790,228 - Dsui_2637 0.33 -0.5
2,790,228 - Dsui_2637 0.33 -0.1
2,790,327 - Dsui_2637 0.40 +0.1
2,790,327 - Dsui_2637 0.40 -0.4
2,790,327 - Dsui_2637 0.40 +0.8
2,790,365 - Dsui_2637 0.43 -1.2
2,790,365 - Dsui_2637 0.43 -0.0
2,790,519 - Dsui_2637 0.56 +0.1
2,790,647 - Dsui_2637 0.66 +0.2
2,790,695 - Dsui_2637 0.69 +0.1
2,790,697 + Dsui_2637 0.69 -0.3
2,790,705 - Dsui_2637 0.70 +0.0
2,790,946 + Dsui_2637 0.89 -0.1
2,790,946 + Dsui_2637 0.89 +2.0
2,790,977 - +0.0
2,790,987 - +1.3
2,790,991 - +0.1
2,791,015 - +0.5
2,791,135 + -0.6
2,791,143 + -0.7
2,791,151 - +0.6
2,791,210 - Dsui_2638 0.13 -2.0
2,791,306 + Dsui_2638 0.41 -0.8
2,791,369 - Dsui_2638 0.59 +0.2
2,791,369 - Dsui_2638 0.59 -0.8
2,791,439 + Dsui_2638 0.79 -0.2
2,791,460 + Dsui_2638 0.86 -0.0
2,791,503 - +0.1
2,791,546 + -0.5
2,791,564 + +0.2
2,791,604 - Dsui_2639 0.17 +0.2
2,791,662 - Dsui_2639 0.30 +2.0
2,791,728 + Dsui_2639 0.45 +0.4
2,791,773 - Dsui_2639 0.55 +0.1
2,791,801 - Dsui_2639 0.61 +0.4
2,791,884 - Dsui_2639 0.80 -0.3
2,791,928 - +0.4
2,791,958 - +1.0
2,791,998 - -0.4
2,792,011 - +0.2
2,792,065 + +0.6
2,792,065 + -0.1
2,792,073 - -0.2
2,792,088 + +1.6
2,792,096 - +0.3
2,792,096 - +0.4
2,792,103 - +1.5
2,792,240 + Dsui_2640 0.26 -2.7
2,792,256 - Dsui_2640 0.28 -1.5
2,792,320 + Dsui_2640 0.38 -0.9
2,792,431 - Dsui_2640 0.55 -1.7
2,792,436 - Dsui_2640 0.56 +0.7

Or see this region's nucleotide sequence