Strain Fitness in Dechlorosoma suillum PS around Dsui_2380

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2378 and Dsui_2379 are separated by 78 nucleotidesDsui_2379 and Dsui_2380 are separated by 27 nucleotidesDsui_2380 and Dsui_2381 are separated by 19 nucleotides Dsui_2378: Dsui_2378 - hypothetical protein, at 2,527,137 to 2,527,454 _2378 Dsui_2379: Dsui_2379 - phosphoserine phosphatase SerB, at 2,527,533 to 2,528,375 _2379 Dsui_2380: Dsui_2380 - isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase, at 2,528,403 to 2,528,945 _2380 Dsui_2381: Dsui_2381 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,528,965 to 2,530,041 _2381 Position (kb) 2528 2529Strain fitness (log2 ratio) -1 0 1at 2527.487 kb on + strandat 2527.509 kb on - strandat 2528.402 kb on - strandat 2528.402 kb on - strandat 2528.549 kb on - strand, within Dsui_2380at 2528.832 kb on - strand, within Dsui_2380at 2528.879 kb on - strand, within Dsui_2380at 2528.928 kb on - strandat 2528.935 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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2,527,487 + -0.1
2,527,509 - +0.4
2,528,402 - +0.2
2,528,402 - +0.2
2,528,549 - Dsui_2380 0.27 -0.3
2,528,832 - Dsui_2380 0.79 -0.4
2,528,879 - Dsui_2380 0.88 -1.6
2,528,928 - -0.1
2,528,935 - -0.0

Or see this region's nucleotide sequence