Strain Fitness in Dechlorosoma suillum PS around Dsui_2230

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2229 and Dsui_2230 are separated by 95 nucleotidesDsui_2230 and Dsui_2231 overlap by 81 nucleotides Dsui_2229: Dsui_2229 - transcriptional regulator, at 2,369,905 to 2,370,780 _2229 Dsui_2230: Dsui_2230 - conserved hypothetical integral membrane protein, at 2,370,876 to 2,371,910 _2230 Dsui_2231: Dsui_2231 - arabinose efflux permease family protein, at 2,371,830 to 2,373,104 _2231 Position (kb) 2370 2371 2372Strain fitness (log2 ratio) -2 -1 0 1at 2370.078 kb on + strandat 2370.078 kb on + strandat 2370.110 kb on + strandat 2370.118 kb on - strand, within Dsui_2229at 2370.118 kb on - strand, within Dsui_2229at 2370.118 kb on - strand, within Dsui_2229at 2370.163 kb on - strand, within Dsui_2229at 2370.168 kb on - strand, within Dsui_2229at 2370.284 kb on - strand, within Dsui_2229at 2370.292 kb on - strandat 2370.396 kb on - strand, within Dsui_2229at 2370.401 kb on - strand, within Dsui_2229at 2370.484 kb on + strandat 2370.510 kb on - strand, within Dsui_2229at 2370.515 kb on - strand, within Dsui_2229at 2370.625 kb on - strand, within Dsui_2229at 2370.642 kb on - strand, within Dsui_2229at 2370.672 kb on - strand, within Dsui_2229at 2370.672 kb on - strand, within Dsui_2229at 2370.691 kb on + strandat 2371.072 kb on + strand, within Dsui_2230at 2371.085 kb on - strandat 2371.214 kb on - strandat 2371.247 kb on - strandat 2371.247 kb on - strandat 2371.468 kb on + strandat 2371.527 kb on - strandat 2371.672 kb on - strandat 2371.680 kb on + strandat 2371.759 kb on - strand, within Dsui_2230at 2371.769 kb on - strand, within Dsui_2230at 2371.786 kb on + strand, within Dsui_2230at 2371.788 kb on - strand, within Dsui_2230at 2371.887 kb on - strandat 2371.923 kb on - strandat 2371.923 kb on - strandat 2372.008 kb on - strand, within Dsui_2231at 2372.023 kb on - strandat 2372.033 kb on - strand, within Dsui_2231at 2372.100 kb on + strand, within Dsui_2231at 2372.105 kb on + strandat 2372.119 kb on - strand, within Dsui_2231at 2372.205 kb on + strandat 2372.248 kb on - strandat 2372.319 kb on + strand, within Dsui_2231at 2372.330 kb on + strandat 2372.330 kb on + strandat 2372.338 kb on - strand, within Dsui_2231at 2372.338 kb on - strand, within Dsui_2231at 2372.493 kb on + strand, within Dsui_2231at 2372.572 kb on + strandat 2372.635 kb on + strand, within Dsui_2231at 2372.635 kb on - strand, within Dsui_2231at 2372.688 kb on - strand, within Dsui_2231at 2372.698 kb on - strandat 2372.698 kb on - strand, within Dsui_2231at 2372.749 kb on + strandat 2372.750 kb on - strand, within Dsui_2231at 2372.767 kb on - strand, within Dsui_2231at 2372.797 kb on - strand, within Dsui_2231at 2372.814 kb on + strand, within Dsui_2231at 2372.817 kb on - strand, within Dsui_2231at 2372.882 kb on + strandat 2372.907 kb on + strand, within Dsui_2231

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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2,370,078 + -1.3
2,370,078 + +0.3
2,370,110 + -0.5
2,370,118 - Dsui_2229 0.24 -0.5
2,370,118 - Dsui_2229 0.24 -0.1
2,370,118 - Dsui_2229 0.24 -0.1
2,370,163 - Dsui_2229 0.29 -0.3
2,370,168 - Dsui_2229 0.30 +0.0
2,370,284 - Dsui_2229 0.43 -0.2
2,370,292 - +1.4
2,370,396 - Dsui_2229 0.56 -0.4
2,370,401 - Dsui_2229 0.57 +0.4
2,370,484 + -0.3
2,370,510 - Dsui_2229 0.69 -0.2
2,370,515 - Dsui_2229 0.70 +0.1
2,370,625 - Dsui_2229 0.82 +0.2
2,370,642 - Dsui_2229 0.84 -0.2
2,370,672 - Dsui_2229 0.88 -1.1
2,370,672 - Dsui_2229 0.88 -0.2
2,370,691 + +0.9
2,371,072 + Dsui_2230 0.19 -0.2
2,371,085 - -0.7
2,371,214 - -0.1
2,371,247 - -1.9
2,371,247 - +1.6
2,371,468 + -0.4
2,371,527 - +0.9
2,371,672 - +0.8
2,371,680 + -0.6
2,371,759 - Dsui_2230 0.85 -0.7
2,371,769 - Dsui_2230 0.86 +0.4
2,371,786 + Dsui_2230 0.88 -1.4
2,371,788 - Dsui_2230 0.88 -1.3
2,371,887 - -0.3
2,371,923 - +0.3
2,371,923 - +0.2
2,372,008 - Dsui_2231 0.14 +0.2
2,372,023 - -0.3
2,372,033 - Dsui_2231 0.16 -1.2
2,372,100 + Dsui_2231 0.21 +0.5
2,372,105 + +0.0
2,372,119 - Dsui_2231 0.23 -1.1
2,372,205 + +1.3
2,372,248 - -0.1
2,372,319 + Dsui_2231 0.38 +0.5
2,372,330 + +0.3
2,372,330 + -0.3
2,372,338 - Dsui_2231 0.40 -0.2
2,372,338 - Dsui_2231 0.40 -0.4
2,372,493 + Dsui_2231 0.52 +0.7
2,372,572 + -1.5
2,372,635 + Dsui_2231 0.63 -1.7
2,372,635 - Dsui_2231 0.63 -0.5
2,372,688 - Dsui_2231 0.67 -1.2
2,372,698 - +0.8
2,372,698 - Dsui_2231 0.68 +0.6
2,372,749 + -0.2
2,372,750 - Dsui_2231 0.72 -0.9
2,372,767 - Dsui_2231 0.73 -0.2
2,372,797 - Dsui_2231 0.76 -0.5
2,372,814 + Dsui_2231 0.77 +0.4
2,372,817 - Dsui_2231 0.77 +0.2
2,372,882 + -2.0
2,372,907 + Dsui_2231 0.84 -0.7

Or see this region's nucleotide sequence