Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2157 and Dsui_2158 overlap by 20 nucleotides Dsui_2158 and Dsui_2159 are separated by 237 nucleotides
Dsui_2157: Dsui_2157 - PAS domain S-box, at 2,288,246 to 2,290,624
_2157
Dsui_2158: Dsui_2158 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,290,605 to 2,291,252
_2158
Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758
_2159
Position (kb)
2290
2291
2292 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2289.809 kb on + strand, within Dsui_2157 at 2289.939 kb on + strand, within Dsui_2157 at 2289.979 kb on + strand, within Dsui_2157 at 2290.039 kb on - strand at 2290.072 kb on - strand, within Dsui_2157 at 2290.397 kb on + strand at 2290.582 kb on + strand at 2290.587 kb on + strand at 2290.587 kb on + strand at 2290.653 kb on + strand at 2290.697 kb on + strand, within Dsui_2158 at 2290.761 kb on + strand, within Dsui_2158 at 2290.770 kb on - strand at 2291.110 kb on + strand at 2291.332 kb on - strand at 2291.434 kb on + strand at 2291.613 kb on + strand at 2291.656 kb on + strand, within Dsui_2159 at 2291.670 kb on - strand, within Dsui_2159 at 2291.673 kb on + strand, within Dsui_2159 at 2291.673 kb on + strand, within Dsui_2159 at 2291.709 kb on + strand, within Dsui_2159 at 2291.760 kb on - strand, within Dsui_2159 at 2291.804 kb on - strand at 2291.819 kb on + strand, within Dsui_2159 at 2291.909 kb on + strand, within Dsui_2159 at 2291.914 kb on + strand, within Dsui_2159 at 2291.914 kb on + strand, within Dsui_2159 at 2291.956 kb on - strand at 2292.024 kb on + strand at 2292.024 kb on + strand, within Dsui_2159 at 2292.024 kb on + strand, within Dsui_2159 at 2292.037 kb on - strand at 2292.039 kb on + strand, within Dsui_2159
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5 remove 2,289,809 + Dsui_2157 0.66 -0.9 2,289,939 + Dsui_2157 0.71 +0.1 2,289,979 + Dsui_2157 0.73 -0.4 2,290,039 - +1.1 2,290,072 - Dsui_2157 0.77 +0.1 2,290,397 + -0.2 2,290,582 + -0.3 2,290,587 + +0.6 2,290,587 + -2.1 2,290,653 + +0.4 2,290,697 + Dsui_2158 0.14 -0.2 2,290,761 + Dsui_2158 0.24 -1.5 2,290,770 - +2.1 2,291,110 + -1.5 2,291,332 - +0.0 2,291,434 + +0.4 2,291,613 + -0.6 2,291,656 + Dsui_2159 0.13 -0.3 2,291,670 - Dsui_2159 0.14 +0.5 2,291,673 + Dsui_2159 0.14 -0.4 2,291,673 + Dsui_2159 0.14 +0.6 2,291,709 + Dsui_2159 0.17 -0.6 2,291,760 - Dsui_2159 0.21 -0.6 2,291,804 - +0.3 2,291,819 + Dsui_2159 0.26 -0.1 2,291,909 + Dsui_2159 0.33 +0.2 2,291,914 + Dsui_2159 0.33 -0.2 2,291,914 + Dsui_2159 0.33 +0.4 2,291,956 - +0.7 2,292,024 + +0.3 2,292,024 + Dsui_2159 0.42 -0.2 2,292,024 + Dsui_2159 0.42 +0.6 2,292,037 - -0.4 2,292,039 + Dsui_2159 0.43 -0.4
Or see this region's nucleotide sequence