Strain Fitness in Dechlorosoma suillum PS around Dsui_1771

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1770 and Dsui_1771 are separated by 20 nucleotidesDsui_1771 and Dsui_1772 overlap by 4 nucleotides Dsui_1770: Dsui_1770 - hypothetical protein, at 1,856,235 to 1,857,332 _1770 Dsui_1771: Dsui_1771 - hypothetical protein, at 1,857,353 to 1,858,123 _1771 Dsui_1772: Dsui_1772 - type I secretion system ABC transporter, PrtD family, at 1,858,120 to 1,859,859 _1772 Position (kb) 1857 1858 1859Strain fitness (log2 ratio) -2 -1 0 1at 1856.406 kb on - strand, within Dsui_1770at 1856.459 kb on - strand, within Dsui_1770at 1856.527 kb on - strand, within Dsui_1770at 1856.594 kb on + strand, within Dsui_1770at 1856.765 kb on - strand, within Dsui_1770at 1856.799 kb on + strand, within Dsui_1770at 1856.901 kb on - strand, within Dsui_1770at 1856.939 kb on - strand, within Dsui_1770at 1856.969 kb on + strand, within Dsui_1770at 1856.980 kb on + strand, within Dsui_1770at 1856.993 kb on - strand, within Dsui_1770at 1857.043 kb on - strand, within Dsui_1770at 1857.080 kb on - strand, within Dsui_1770at 1857.083 kb on + strand, within Dsui_1770at 1857.091 kb on - strand, within Dsui_1770at 1857.147 kb on - strand, within Dsui_1770at 1857.147 kb on - strand, within Dsui_1770at 1857.188 kb on + strand, within Dsui_1770at 1857.276 kb on + strandat 1857.313 kb on + strandat 1857.363 kb on - strandat 1857.410 kb on - strandat 1857.410 kb on - strandat 1857.410 kb on - strandat 1857.410 kb on - strandat 1857.420 kb on - strandat 1857.460 kb on + strand, within Dsui_1771at 1857.578 kb on + strand, within Dsui_1771at 1857.580 kb on + strand, within Dsui_1771at 1857.680 kb on + strand, within Dsui_1771at 1857.701 kb on + strand, within Dsui_1771at 1857.981 kb on - strand, within Dsui_1771at 1858.011 kb on - strand, within Dsui_1771at 1858.089 kb on + strandat 1858.094 kb on + strandat 1858.107 kb on - strandat 1858.142 kb on + strandat 1858.142 kb on + strandat 1858.263 kb on - strandat 1858.263 kb on - strandat 1858.347 kb on - strand, within Dsui_1772at 1858.468 kb on - strand, within Dsui_1772at 1858.473 kb on - strandat 1858.519 kb on - strand, within Dsui_1772at 1858.566 kb on + strand, within Dsui_1772at 1858.625 kb on - strandat 1858.634 kb on + strand, within Dsui_1772at 1858.662 kb on - strand, within Dsui_1772at 1858.840 kb on + strand, within Dsui_1772at 1858.841 kb on + strand, within Dsui_1772at 1858.846 kb on + strand, within Dsui_1772at 1858.851 kb on + strand, within Dsui_1772at 1858.923 kb on + strand, within Dsui_1772at 1859.095 kb on - strand, within Dsui_1772

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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1,856,406 - Dsui_1770 0.16 -0.9
1,856,459 - Dsui_1770 0.20 -0.7
1,856,527 - Dsui_1770 0.27 +0.6
1,856,594 + Dsui_1770 0.33 -0.6
1,856,765 - Dsui_1770 0.48 +0.1
1,856,799 + Dsui_1770 0.51 -0.8
1,856,901 - Dsui_1770 0.61 -0.5
1,856,939 - Dsui_1770 0.64 +0.2
1,856,969 + Dsui_1770 0.67 -0.1
1,856,980 + Dsui_1770 0.68 -0.5
1,856,993 - Dsui_1770 0.69 +0.0
1,857,043 - Dsui_1770 0.74 +0.6
1,857,080 - Dsui_1770 0.77 -1.2
1,857,083 + Dsui_1770 0.77 +0.4
1,857,091 - Dsui_1770 0.78 +0.2
1,857,147 - Dsui_1770 0.83 +0.7
1,857,147 - Dsui_1770 0.83 +0.4
1,857,188 + Dsui_1770 0.87 +0.4
1,857,276 + +0.3
1,857,313 + +0.1
1,857,363 - -0.3
1,857,410 - -1.6
1,857,410 - +0.9
1,857,410 - +0.4
1,857,410 - +0.2
1,857,420 - +0.7
1,857,460 + Dsui_1771 0.14 -0.2
1,857,578 + Dsui_1771 0.29 +0.3
1,857,580 + Dsui_1771 0.29 +1.0
1,857,680 + Dsui_1771 0.42 -0.4
1,857,701 + Dsui_1771 0.45 +0.4
1,857,981 - Dsui_1771 0.81 +1.1
1,858,011 - Dsui_1771 0.85 +0.8
1,858,089 + +0.3
1,858,094 + -1.5
1,858,107 - +0.4
1,858,142 + +0.0
1,858,142 + -0.5
1,858,263 - -0.1
1,858,263 - +0.9
1,858,347 - Dsui_1772 0.13 -0.3
1,858,468 - Dsui_1772 0.20 +0.0
1,858,473 - -2.1
1,858,519 - Dsui_1772 0.23 -0.6
1,858,566 + Dsui_1772 0.26 +0.1
1,858,625 - -1.2
1,858,634 + Dsui_1772 0.30 -0.4
1,858,662 - Dsui_1772 0.31 -0.5
1,858,840 + Dsui_1772 0.41 -0.3
1,858,841 + Dsui_1772 0.41 -0.3
1,858,846 + Dsui_1772 0.42 +0.5
1,858,851 + Dsui_1772 0.42 -2.5
1,858,923 + Dsui_1772 0.46 -0.5
1,859,095 - Dsui_1772 0.56 +0.1

Or see this region's nucleotide sequence