Strain Fitness in Dechlorosoma suillum PS around Dsui_1662

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1660 and Dsui_1661 overlap by 1 nucleotidesDsui_1661 and Dsui_1662 are separated by 119 nucleotidesDsui_1662 and Dsui_1663 are separated by 162 nucleotides Dsui_1660: Dsui_1660 - outer membrane cobalamin receptor protein, at 1,743,236 to 1,745,314 _1660 Dsui_1661: Dsui_1661 - hypothetical protein, at 1,745,314 to 1,745,790 _1661 Dsui_1662: Dsui_1662 - Oxidoreductase NAD-binding domain/Flavodoxin, at 1,745,910 to 1,747,262 _1662 Dsui_1663: Dsui_1663 - ABC-type Co2+ transport system, periplasmic component, at 1,747,425 to 1,748,228 _1663 Position (kb) 1745 1746 1747 1748Strain fitness (log2 ratio) -2 -1 0 1at 1745.037 kb on + strand, within Dsui_1660at 1745.173 kb on - strandat 1745.213 kb on + strandat 1745.327 kb on + strandat 1745.335 kb on - strandat 1745.346 kb on - strandat 1745.377 kb on + strand, within Dsui_1661at 1745.481 kb on - strandat 1745.493 kb on - strand, within Dsui_1661at 1745.532 kb on + strand, within Dsui_1661at 1745.563 kb on - strand, within Dsui_1661at 1745.574 kb on + strand, within Dsui_1661at 1745.574 kb on - strand, within Dsui_1661at 1745.594 kb on + strand, within Dsui_1661at 1745.599 kb on + strandat 1745.602 kb on - strandat 1745.641 kb on - strand, within Dsui_1661at 1745.829 kb on - strandat 1745.829 kb on - strandat 1745.839 kb on + strandat 1745.909 kb on - strandat 1745.952 kb on + strandat 1745.960 kb on - strandat 1745.986 kb on - strandat 1746.057 kb on + strand, within Dsui_1662at 1746.088 kb on - strand, within Dsui_1662at 1746.134 kb on + strand, within Dsui_1662at 1746.267 kb on - strand, within Dsui_1662at 1746.271 kb on + strand, within Dsui_1662at 1746.308 kb on + strandat 1746.436 kb on + strandat 1746.805 kb on - strand, within Dsui_1662at 1746.891 kb on + strand, within Dsui_1662at 1746.891 kb on + strandat 1746.907 kb on + strand, within Dsui_1662at 1747.028 kb on + strandat 1747.029 kb on + strandat 1747.047 kb on - strand, within Dsui_1662at 1747.196 kb on - strandat 1747.326 kb on - strandat 1747.642 kb on - strand, within Dsui_1663at 1747.690 kb on + strand, within Dsui_1663at 1747.845 kb on + strandat 1747.880 kb on - strand, within Dsui_1663at 1747.892 kb on + strand, within Dsui_1663at 1747.900 kb on - strand, within Dsui_1663at 1747.939 kb on + strand, within Dsui_1663at 1747.947 kb on - strand, within Dsui_1663at 1748.093 kb on - strand, within Dsui_1663at 1748.116 kb on + strandat 1748.116 kb on + strandat 1748.116 kb on + strand, within Dsui_1663

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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1,745,037 + Dsui_1660 0.87 -0.5
1,745,173 - +0.2
1,745,213 + -0.2
1,745,327 + -0.1
1,745,335 - -1.6
1,745,346 - +1.0
1,745,377 + Dsui_1661 0.13 -0.3
1,745,481 - -1.1
1,745,493 - Dsui_1661 0.38 +0.7
1,745,532 + Dsui_1661 0.46 +0.1
1,745,563 - Dsui_1661 0.52 -0.4
1,745,574 + Dsui_1661 0.55 +0.2
1,745,574 - Dsui_1661 0.55 -0.2
1,745,594 + Dsui_1661 0.59 -0.4
1,745,599 + +0.2
1,745,602 - -0.6
1,745,641 - Dsui_1661 0.69 +0.3
1,745,829 - -0.6
1,745,829 - -0.0
1,745,839 + -1.0
1,745,909 - +1.1
1,745,952 + +0.4
1,745,960 - -0.5
1,745,986 - +0.3
1,746,057 + Dsui_1662 0.11 -1.1
1,746,088 - Dsui_1662 0.13 -0.6
1,746,134 + Dsui_1662 0.17 -1.0
1,746,267 - Dsui_1662 0.26 -2.5
1,746,271 + Dsui_1662 0.27 -0.1
1,746,308 + +0.4
1,746,436 + +1.0
1,746,805 - Dsui_1662 0.66 -0.2
1,746,891 + Dsui_1662 0.73 -0.6
1,746,891 + +0.2
1,746,907 + Dsui_1662 0.74 -0.3
1,747,028 + -0.5
1,747,029 + -0.2
1,747,047 - Dsui_1662 0.84 -1.6
1,747,196 - +0.4
1,747,326 - -0.8
1,747,642 - Dsui_1663 0.27 +0.1
1,747,690 + Dsui_1663 0.33 -0.2
1,747,845 + -0.2
1,747,880 - Dsui_1663 0.57 +0.0
1,747,892 + Dsui_1663 0.58 -0.1
1,747,900 - Dsui_1663 0.59 -0.3
1,747,939 + Dsui_1663 0.64 -0.9
1,747,947 - Dsui_1663 0.65 +0.3
1,748,093 - Dsui_1663 0.83 +0.8
1,748,116 + -2.1
1,748,116 + -1.5
1,748,116 + Dsui_1663 0.86 -0.4

Or see this region's nucleotide sequence