Strain Fitness in Dechlorosoma suillum PS around Dsui_1352

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1351 and Dsui_1352 are separated by 83 nucleotidesDsui_1352 and Dsui_1353 are separated by 324 nucleotides Dsui_1351: Dsui_1351 - DNA/RNA helicase, superfamily II, at 1,406,162 to 1,408,087 _1351 Dsui_1352: Dsui_1352 - acyl dehydratase, at 1,408,171 to 1,408,602 _1352 Dsui_1353: Dsui_1353 - flagellar capping protein, at 1,408,927 to 1,409,817 _1353 Position (kb) 1408 1409Strain fitness (log2 ratio) -1 0 1at 1407.354 kb on + strand, within Dsui_1351at 1407.495 kb on + strand, within Dsui_1351at 1407.498 kb on - strand, within Dsui_1351at 1407.522 kb on + strand, within Dsui_1351at 1407.759 kb on + strand, within Dsui_1351at 1407.768 kb on + strand, within Dsui_1351at 1407.789 kb on + strand, within Dsui_1351at 1407.817 kb on + strand, within Dsui_1351at 1407.976 kb on - strandat 1408.088 kb on + strandat 1408.328 kb on + strand, within Dsui_1352at 1408.361 kb on - strand, within Dsui_1352at 1408.479 kb on + strand, within Dsui_1352at 1408.481 kb on + strand, within Dsui_1352at 1408.487 kb on - strand, within Dsui_1352at 1408.489 kb on - strand, within Dsui_1352at 1408.569 kb on + strandat 1408.675 kb on + strandat 1408.836 kb on + strandat 1408.921 kb on + strandat 1409.000 kb on + strandat 1409.008 kb on - strandat 1409.103 kb on + strand, within Dsui_1353at 1409.139 kb on + strandat 1409.156 kb on + strand, within Dsui_1353at 1409.230 kb on - strand, within Dsui_1353at 1409.273 kb on + strand, within Dsui_1353at 1409.278 kb on + strand, within Dsui_1353at 1409.286 kb on - strand, within Dsui_1353at 1409.297 kb on - strandat 1409.388 kb on + strand, within Dsui_1353at 1409.438 kb on + strand, within Dsui_1353at 1409.539 kb on + strand, within Dsui_1353

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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1,407,354 + Dsui_1351 0.62 +0.1
1,407,495 + Dsui_1351 0.69 -0.4
1,407,498 - Dsui_1351 0.69 -1.3
1,407,522 + Dsui_1351 0.71 -0.2
1,407,759 + Dsui_1351 0.83 -0.8
1,407,768 + Dsui_1351 0.83 +1.5
1,407,789 + Dsui_1351 0.84 -0.8
1,407,817 + Dsui_1351 0.86 -0.9
1,407,976 - -1.2
1,408,088 + -0.2
1,408,328 + Dsui_1352 0.36 +0.3
1,408,361 - Dsui_1352 0.44 +1.6
1,408,479 + Dsui_1352 0.71 +1.3
1,408,481 + Dsui_1352 0.72 -0.2
1,408,487 - Dsui_1352 0.73 +0.3
1,408,489 - Dsui_1352 0.74 -0.5
1,408,569 + -0.9
1,408,675 + +0.3
1,408,836 + -0.6
1,408,921 + -0.6
1,409,000 + -0.1
1,409,008 - +0.5
1,409,103 + Dsui_1353 0.20 +0.2
1,409,139 + +1.3
1,409,156 + Dsui_1353 0.26 -0.3
1,409,230 - Dsui_1353 0.34 -0.6
1,409,273 + Dsui_1353 0.39 +0.3
1,409,278 + Dsui_1353 0.39 -0.2
1,409,286 - Dsui_1353 0.40 -0.2
1,409,297 - +0.4
1,409,388 + Dsui_1353 0.52 +0.1
1,409,438 + Dsui_1353 0.57 +0.2
1,409,539 + Dsui_1353 0.69 -0.6

Or see this region's nucleotide sequence