Strain Fitness in Dechlorosoma suillum PS around Dsui_1094

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1092 and Dsui_1093 are separated by 115 nucleotidesDsui_1093 and Dsui_1094 overlap by 4 nucleotidesDsui_1094 and Dsui_1095 overlap by 4 nucleotides Dsui_1092: Dsui_1092 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,131,720 to 1,132,877 _1092 Dsui_1093: Dsui_1093 - hypothetical protein, at 1,132,993 to 1,133,337 _1093 Dsui_1094: Dsui_1094 - shikimate kinase, at 1,133,334 to 1,133,906 _1094 Dsui_1095: Dsui_1095 - 3-dehydroquinate synthase, at 1,133,903 to 1,134,997 _1095 Position (kb) 1133 1134Strain fitness (log2 ratio) -1 0 1 2at 1132.909 kb on - strandat 1132.915 kb on + strandat 1132.978 kb on + strandat 1133.033 kb on - strand, within Dsui_1093at 1133.066 kb on + strand, within Dsui_1093at 1133.066 kb on + strand, within Dsui_1093at 1133.110 kb on + strand, within Dsui_1093at 1133.134 kb on + strand, within Dsui_1093at 1133.134 kb on + strand, within Dsui_1093at 1133.134 kb on + strand, within Dsui_1093at 1133.134 kb on + strand, within Dsui_1093at 1133.144 kb on + strandat 1133.190 kb on + strand, within Dsui_1093at 1133.190 kb on + strand, within Dsui_1093at 1133.223 kb on + strand, within Dsui_1093at 1133.784 kb on + strand, within Dsui_1094at 1133.858 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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1,132,909 - -0.2
1,132,915 + -0.9
1,132,978 + +0.4
1,133,033 - Dsui_1093 0.12 -0.5
1,133,066 + Dsui_1093 0.21 -0.4
1,133,066 + Dsui_1093 0.21 +0.4
1,133,110 + Dsui_1093 0.34 +0.4
1,133,134 + Dsui_1093 0.41 +1.8
1,133,134 + Dsui_1093 0.41 -1.1
1,133,134 + Dsui_1093 0.41 -0.2
1,133,134 + Dsui_1093 0.41 +0.2
1,133,144 + -1.4
1,133,190 + Dsui_1093 0.57 -0.1
1,133,190 + Dsui_1093 0.57 +0.2
1,133,223 + Dsui_1093 0.67 -0.2
1,133,784 + Dsui_1094 0.79 -0.8
1,133,858 + -0.0

Or see this region's nucleotide sequence