Strain Fitness in Dechlorosoma suillum PS around Dsui_0035

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0034 and Dsui_0035 are separated by 267 nucleotidesDsui_0035 and Dsui_0036 are separated by 115 nucleotidesDsui_0036 and Dsui_0037 are separated by 86 nucleotides Dsui_0034: Dsui_0034 - flagellar capping protein, at 30,101 to 31,537 _0034 Dsui_0035: Dsui_0035 - ankyrin repeat-containing protein, at 31,805 to 32,854 _0035 Dsui_0036: Dsui_0036 - TonB family protein, at 32,970 to 33,542 _0036 Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840 _0037 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1at 30.808 kb on - strand, within Dsui_0034at 30.947 kb on + strand, within Dsui_0034at 30.968 kb on + strand, within Dsui_0034at 31.022 kb on - strand, within Dsui_0034at 31.104 kb on - strand, within Dsui_0034at 31.157 kb on + strand, within Dsui_0034at 31.215 kb on - strand, within Dsui_0034at 31.328 kb on + strandat 31.391 kb on + strandat 31.399 kb on - strandat 31.417 kb on + strandat 31.484 kb on - strandat 31.549 kb on + strandat 31.569 kb on + strandat 31.604 kb on - strandat 31.622 kb on + strandat 31.630 kb on - strandat 31.827 kb on + strandat 31.835 kb on - strandat 31.883 kb on - strandat 32.118 kb on - strand, within Dsui_0035at 32.129 kb on - strand, within Dsui_0035at 32.187 kb on - strand, within Dsui_0035at 32.206 kb on + strand, within Dsui_0035at 32.207 kb on + strandat 32.210 kb on - strand, within Dsui_0035at 32.210 kb on - strand, within Dsui_0035at 32.215 kb on - strandat 32.215 kb on - strand, within Dsui_0035at 32.215 kb on - strand, within Dsui_0035at 32.230 kb on - strand, within Dsui_0035at 32.280 kb on - strand, within Dsui_0035at 32.282 kb on + strand, within Dsui_0035at 32.332 kb on - strand, within Dsui_0035at 32.433 kb on + strandat 32.477 kb on + strandat 32.486 kb on + strand, within Dsui_0035at 32.618 kb on - strand, within Dsui_0035at 32.660 kb on + strandat 32.671 kb on + strandat 32.671 kb on + strandat 32.758 kb on - strandat 32.834 kb on - strandat 33.188 kb on + strand, within Dsui_0036at 33.188 kb on + strand, within Dsui_0036at 33.261 kb on - strand, within Dsui_0036at 33.273 kb on - strand, within Dsui_0036at 33.332 kb on + strand, within Dsui_0036at 33.353 kb on - strand, within Dsui_0036at 33.551 kb on + strandat 33.559 kb on - strandat 33.671 kb on + strandat 33.715 kb on + strandat 33.786 kb on - strand, within Dsui_0037at 33.851 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
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30,808 - Dsui_0034 0.49 +0.0
30,947 + Dsui_0034 0.59 -0.5
30,968 + Dsui_0034 0.60 -1.0
31,022 - Dsui_0034 0.64 -0.1
31,104 - Dsui_0034 0.70 -0.8
31,157 + Dsui_0034 0.73 -0.1
31,215 - Dsui_0034 0.78 -0.3
31,328 + -0.2
31,391 + -0.8
31,399 - -0.4
31,417 + -1.0
31,484 - -0.5
31,549 + -0.1
31,569 + -0.5
31,604 - +0.2
31,622 + -0.3
31,630 - +0.7
31,827 + -0.3
31,835 - +0.1
31,883 - +0.2
32,118 - Dsui_0035 0.30 -1.3
32,129 - Dsui_0035 0.31 -0.4
32,187 - Dsui_0035 0.36 -0.6
32,206 + Dsui_0035 0.38 +0.0
32,207 + -2.3
32,210 - Dsui_0035 0.39 -0.0
32,210 - Dsui_0035 0.39 -0.7
32,215 - -1.3
32,215 - Dsui_0035 0.39 -0.2
32,215 - Dsui_0035 0.39 -2.0
32,230 - Dsui_0035 0.40 -0.4
32,280 - Dsui_0035 0.45 +0.4
32,282 + Dsui_0035 0.45 -0.5
32,332 - Dsui_0035 0.50 -0.2
32,433 + -1.3
32,477 + -2.2
32,486 + Dsui_0035 0.65 -0.4
32,618 - Dsui_0035 0.77 -0.1
32,660 + -1.2
32,671 + -2.2
32,671 + -1.0
32,758 - -0.4
32,834 - -1.8
33,188 + Dsui_0036 0.38 -0.3
33,188 + Dsui_0036 0.38 -0.5
33,261 - Dsui_0036 0.51 -0.3
33,273 - Dsui_0036 0.53 -0.8
33,332 + Dsui_0036 0.63 +0.5
33,353 - Dsui_0036 0.67 -0.2
33,551 + -0.4
33,559 - -0.2
33,671 + -0.3
33,715 + -0.2
33,786 - Dsui_0037 0.13 -0.5
33,851 + +0.0

Or see this region's nucleotide sequence