Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3998 and Dshi_3999 are separated by 80 nucleotides Dshi_3999 and Dshi_4000 are separated by 124 nucleotides Dshi_4000 and Dshi_4001 are separated by 100 nucleotides Dshi_4001 and Dshi_4002 are separated by 1 nucleotides
Dshi_3998: Dshi_3998 - DNA polymerase III, alpha subunit (RefSeq), at 60,274 to 63,624
_3998
Dshi_3999: Dshi_3999 - ParB-like nuclease (RefSeq), at 63,705 to 64,433
_3999
Dshi_4000: Dshi_4000 - hypothetical protein (RefSeq), at 64,558 to 64,860
_4000
Dshi_4001: Dshi_4001 - hypothetical protein (RefSeq), at 64,961 to 65,422
_4001
Dshi_4002: Dshi_4002 - hypothetical protein (RefSeq), at 65,424 to 65,810
_4002
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1 at 62.776 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on - strand, within Dshi_3998 at 62.797 kb on - strand, within Dshi_3998 at 62.797 kb on - strand, within Dshi_3998 at 62.901 kb on + strand, within Dshi_3998 at 63.193 kb on - strand, within Dshi_3998 at 63.276 kb on + strand, within Dshi_3998 at 63.343 kb on + strand at 63.396 kb on + strand at 63.534 kb on + strand at 63.565 kb on + strand at 63.581 kb on - strand at 63.788 kb on - strand, within Dshi_3999 at 63.797 kb on + strand, within Dshi_3999 at 63.800 kb on - strand, within Dshi_3999 at 63.805 kb on - strand, within Dshi_3999 at 63.840 kb on - strand, within Dshi_3999 at 63.921 kb on + strand, within Dshi_3999 at 64.131 kb on + strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.158 kb on - strand, within Dshi_3999 at 64.173 kb on - strand, within Dshi_3999 at 64.192 kb on + strand, within Dshi_3999 at 64.235 kb on - strand, within Dshi_3999 at 64.252 kb on + strand, within Dshi_3999 at 64.276 kb on + strand, within Dshi_3999 at 64.341 kb on - strand, within Dshi_3999 at 64.420 kb on - strand at 64.633 kb on - strand, within Dshi_4000 at 64.694 kb on - strand, within Dshi_4000 at 64.761 kb on + strand, within Dshi_4000 at 64.807 kb on - strand, within Dshi_4000 at 64.838 kb on + strand at 64.846 kb on - strand at 65.056 kb on + strand, within Dshi_4001 at 65.056 kb on + strand, within Dshi_4001 at 65.064 kb on - strand, within Dshi_4001 at 65.086 kb on + strand, within Dshi_4001 at 65.134 kb on + strand, within Dshi_4001 at 65.148 kb on + strand, within Dshi_4001 at 65.239 kb on + strand, within Dshi_4001 at 65.239 kb on - strand, within Dshi_4001 at 65.281 kb on - strand, within Dshi_4001 at 65.309 kb on - strand, within Dshi_4001 at 65.360 kb on - strand, within Dshi_4001
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 62,776 + Dshi_3998 0.75 -0.4 62,789 + Dshi_3998 0.75 +1.5 62,789 + Dshi_3998 0.75 +0.8 62,789 + Dshi_3998 0.75 +0.1 62,789 + Dshi_3998 0.75 -1.0 62,789 + Dshi_3998 0.75 +1.0 62,789 - Dshi_3998 0.75 -0.4 62,797 - Dshi_3998 0.75 -0.3 62,797 - Dshi_3998 0.75 -0.5 62,901 + Dshi_3998 0.78 -0.8 63,193 - Dshi_3998 0.87 -0.3 63,276 + Dshi_3998 0.90 +0.8 63,343 + +0.7 63,396 + -0.4 63,534 + -1.5 63,565 + -0.4 63,581 - +1.0 63,788 - Dshi_3999 0.11 -0.3 63,797 + Dshi_3999 0.13 -0.2 63,800 - Dshi_3999 0.13 -0.5 63,805 - Dshi_3999 0.14 -0.1 63,840 - Dshi_3999 0.19 +1.0 63,921 + Dshi_3999 0.30 -0.4 64,131 + Dshi_3999 0.58 -0.2 64,139 - Dshi_3999 0.60 +0.5 64,139 - Dshi_3999 0.60 -0.7 64,139 - Dshi_3999 0.60 -0.5 64,139 - Dshi_3999 0.60 +0.5 64,139 - Dshi_3999 0.60 -0.6 64,158 - Dshi_3999 0.62 +0.2 64,173 - Dshi_3999 0.64 -1.2 64,192 + Dshi_3999 0.67 -0.3 64,235 - Dshi_3999 0.73 +0.0 64,252 + Dshi_3999 0.75 +1.0 64,276 + Dshi_3999 0.78 +0.5 64,341 - Dshi_3999 0.87 +0.8 64,420 - -0.0 64,633 - Dshi_4000 0.25 +1.5 64,694 - Dshi_4000 0.45 -0.4 64,761 + Dshi_4000 0.67 -0.8 64,807 - Dshi_4000 0.82 -0.8 64,838 + +1.1 64,846 - -0.1 65,056 + Dshi_4001 0.21 -1.1 65,056 + Dshi_4001 0.21 -1.8 65,064 - Dshi_4001 0.22 +0.4 65,086 + Dshi_4001 0.27 -1.3 65,134 + Dshi_4001 0.37 +1.5 65,148 + Dshi_4001 0.40 +0.5 65,239 + Dshi_4001 0.60 +0.9 65,239 - Dshi_4001 0.60 +0.3 65,281 - Dshi_4001 0.69 +0.2 65,309 - Dshi_4001 0.75 +0.4 65,360 - Dshi_4001 0.86 -0.4
Or see this region's nucleotide sequence