Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3644

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3643 and Dshi_3644 overlap by 1 nucleotidesDshi_3644 and Dshi_3645 are separated by 14 nucleotidesDshi_3645 and Dshi_3646 are separated by 1 nucleotides Dshi_3643: Dshi_3643 - Lytic transglycosylase catalytic (RefSeq), at 42,877 to 44,031 _3643 Dshi_3644: Dshi_3644 - hypothetical protein (RefSeq), at 44,031 to 44,840 _3644 Dshi_3645: Dshi_3645 - VirB8 family protein (RefSeq), at 44,855 to 45,511 _3645 Dshi_3646: Dshi_3646 - Conjugal transfer protein TrbG/VirB9/CagX (RefSeq), at 45,513 to 46,208 _3646 Position (kb) 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 43.032 kb on - strand, within Dshi_3643at 43.087 kb on - strand, within Dshi_3643at 43.099 kb on + strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.107 kb on - strand, within Dshi_3643at 43.118 kb on - strand, within Dshi_3643at 43.125 kb on - strand, within Dshi_3643at 43.189 kb on + strand, within Dshi_3643at 43.228 kb on + strand, within Dshi_3643at 43.326 kb on + strand, within Dshi_3643at 43.331 kb on - strand, within Dshi_3643at 43.331 kb on - strand, within Dshi_3643at 43.341 kb on - strand, within Dshi_3643at 43.341 kb on - strand, within Dshi_3643at 43.356 kb on - strand, within Dshi_3643at 43.412 kb on + strand, within Dshi_3643at 43.420 kb on - strand, within Dshi_3643at 43.420 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.436 kb on - strand, within Dshi_3643at 43.471 kb on - strand, within Dshi_3643at 43.481 kb on + strand, within Dshi_3643at 43.489 kb on - strand, within Dshi_3643at 43.489 kb on - strand, within Dshi_3643at 43.535 kb on - strand, within Dshi_3643at 43.575 kb on - strand, within Dshi_3643at 43.627 kb on + strand, within Dshi_3643at 43.627 kb on + strand, within Dshi_3643at 43.639 kb on + strand, within Dshi_3643at 43.644 kb on + strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.645 kb on - strand, within Dshi_3643at 43.646 kb on - strand, within Dshi_3643at 43.648 kb on + strand, within Dshi_3643at 43.657 kb on - strand, within Dshi_3643at 43.672 kb on - strand, within Dshi_3643at 43.688 kb on + strand, within Dshi_3643at 43.728 kb on - strand, within Dshi_3643at 43.755 kb on - strand, within Dshi_3643at 43.814 kb on + strand, within Dshi_3643at 43.817 kb on - strand, within Dshi_3643at 43.843 kb on + strand, within Dshi_3643at 43.876 kb on + strand, within Dshi_3643at 43.876 kb on + strand, within Dshi_3643at 43.877 kb on + strand, within Dshi_3643at 43.884 kb on - strand, within Dshi_3643at 43.884 kb on - strand, within Dshi_3643at 43.885 kb on - strand, within Dshi_3643at 43.891 kb on + strand, within Dshi_3643at 43.933 kb on + strandat 43.941 kb on - strandat 43.941 kb on - strandat 43.947 kb on + strandat 43.971 kb on + strandat 44.024 kb on - strandat 44.069 kb on + strandat 44.069 kb on + strandat 44.076 kb on - strandat 44.103 kb on - strandat 44.104 kb on - strandat 44.144 kb on - strand, within Dshi_3644at 44.144 kb on - strand, within Dshi_3644at 44.236 kb on - strand, within Dshi_3644at 44.277 kb on + strand, within Dshi_3644at 44.285 kb on - strand, within Dshi_3644at 44.285 kb on - strand, within Dshi_3644at 44.342 kb on - strand, within Dshi_3644at 44.349 kb on - strand, within Dshi_3644at 44.365 kb on - strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on + strand, within Dshi_3644at 44.387 kb on - strand, within Dshi_3644at 44.404 kb on + strand, within Dshi_3644at 44.422 kb on - strand, within Dshi_3644at 44.456 kb on + strand, within Dshi_3644at 44.456 kb on + strand, within Dshi_3644at 44.481 kb on + strand, within Dshi_3644at 44.516 kb on + strand, within Dshi_3644at 44.516 kb on + strand, within Dshi_3644at 44.541 kb on - strand, within Dshi_3644at 44.551 kb on - strand, within Dshi_3644at 44.561 kb on + strand, within Dshi_3644at 44.644 kb on + strand, within Dshi_3644at 44.661 kb on - strand, within Dshi_3644at 44.726 kb on + strand, within Dshi_3644at 44.734 kb on - strand, within Dshi_3644at 44.734 kb on - strand, within Dshi_3644at 44.788 kb on - strandat 44.818 kb on + strandat 44.835 kb on + strandat 44.847 kb on - strandat 44.851 kb on - strandat 44.856 kb on - strandat 44.858 kb on - strandat 44.886 kb on - strandat 44.901 kb on + strandat 44.911 kb on - strandat 44.920 kb on + strandat 44.953 kb on - strand, within Dshi_3645at 44.987 kb on + strand, within Dshi_3645at 45.022 kb on - strand, within Dshi_3645at 45.027 kb on + strand, within Dshi_3645at 45.036 kb on - strand, within Dshi_3645at 45.036 kb on - strand, within Dshi_3645at 45.052 kb on - strand, within Dshi_3645at 45.108 kb on + strand, within Dshi_3645at 45.111 kb on - strand, within Dshi_3645at 45.115 kb on + strand, within Dshi_3645at 45.116 kb on - strand, within Dshi_3645at 45.143 kb on - strand, within Dshi_3645at 45.190 kb on + strand, within Dshi_3645at 45.190 kb on - strand, within Dshi_3645at 45.192 kb on + strand, within Dshi_3645at 45.201 kb on + strand, within Dshi_3645at 45.206 kb on + strand, within Dshi_3645at 45.206 kb on + strand, within Dshi_3645at 45.209 kb on - strand, within Dshi_3645at 45.211 kb on - strand, within Dshi_3645at 45.216 kb on + strand, within Dshi_3645at 45.235 kb on - strand, within Dshi_3645at 45.235 kb on - strand, within Dshi_3645at 45.321 kb on - strand, within Dshi_3645at 45.350 kb on + strand, within Dshi_3645at 45.350 kb on + strand, within Dshi_3645at 45.351 kb on - strand, within Dshi_3645at 45.360 kb on - strand, within Dshi_3645at 45.379 kb on - strand, within Dshi_3645at 45.390 kb on - strand, within Dshi_3645at 45.390 kb on - strand, within Dshi_3645at 45.393 kb on - strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.442 kb on + strand, within Dshi_3645at 45.443 kb on + strand, within Dshi_3645at 45.447 kb on + strandat 45.450 kb on - strandat 45.451 kb on - strandat 45.455 kb on - strandat 45.455 kb on - strandat 45.455 kb on - strandat 45.464 kb on - strandat 45.470 kb on - strandat 45.470 kb on - strandat 45.546 kb on + strandat 45.559 kb on + strandat 45.562 kb on - strandat 45.562 kb on - strandat 45.566 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.567 kb on - strandat 45.622 kb on + strand, within Dshi_3646at 45.622 kb on + strand, within Dshi_3646at 45.622 kb on + strand, within Dshi_3646at 45.624 kb on + strand, within Dshi_3646at 45.630 kb on - strand, within Dshi_3646at 45.630 kb on - strand, within Dshi_3646at 45.633 kb on + strand, within Dshi_3646at 45.633 kb on - strand, within Dshi_3646at 45.638 kb on + strand, within Dshi_3646at 45.640 kb on - strand, within Dshi_3646at 45.641 kb on - strand, within Dshi_3646at 45.646 kb on - strand, within Dshi_3646at 45.672 kb on - strand, within Dshi_3646at 45.795 kb on + strand, within Dshi_3646at 45.803 kb on - strand, within Dshi_3646

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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43,032 - Dshi_3643 0.13 +0.7
43,087 - Dshi_3643 0.18 -0.6
43,099 + Dshi_3643 0.19 -1.3
43,107 - Dshi_3643 0.20 +0.4
43,107 - Dshi_3643 0.20 -0.8
43,107 - Dshi_3643 0.20 -0.9
43,118 - Dshi_3643 0.21 -0.6
43,125 - Dshi_3643 0.21 -2.0
43,189 + Dshi_3643 0.27 -0.8
43,228 + Dshi_3643 0.30 +0.1
43,326 + Dshi_3643 0.39 -1.4
43,331 - Dshi_3643 0.39 -0.7
43,331 - Dshi_3643 0.39 -0.3
43,341 - Dshi_3643 0.40 -1.6
43,341 - Dshi_3643 0.40 +2.0
43,356 - Dshi_3643 0.41 -0.7
43,412 + Dshi_3643 0.46 -0.2
43,420 - Dshi_3643 0.47 -0.1
43,420 - Dshi_3643 0.47 +0.2
43,436 - Dshi_3643 0.48 -1.2
43,436 - Dshi_3643 0.48 -0.8
43,436 - Dshi_3643 0.48 +0.0
43,471 - Dshi_3643 0.51 -0.7
43,481 + Dshi_3643 0.52 -0.3
43,489 - Dshi_3643 0.53 -0.4
43,489 - Dshi_3643 0.53 -1.1
43,535 - Dshi_3643 0.57 -0.3
43,575 - Dshi_3643 0.60 +0.2
43,627 + Dshi_3643 0.65 +0.4
43,627 + Dshi_3643 0.65 +0.0
43,639 + Dshi_3643 0.66 +0.2
43,644 + Dshi_3643 0.66 +0.5
43,645 - Dshi_3643 0.66 -0.6
43,645 - Dshi_3643 0.66 -0.7
43,645 - Dshi_3643 0.66 -0.7
43,646 - Dshi_3643 0.67 -0.5
43,648 + Dshi_3643 0.67 +0.1
43,657 - Dshi_3643 0.68 +0.2
43,672 - Dshi_3643 0.69 +0.0
43,688 + Dshi_3643 0.70 -0.6
43,728 - Dshi_3643 0.74 +0.2
43,755 - Dshi_3643 0.76 -0.9
43,814 + Dshi_3643 0.81 -1.2
43,817 - Dshi_3643 0.81 -0.7
43,843 + Dshi_3643 0.84 -1.6
43,876 + Dshi_3643 0.86 -0.5
43,876 + Dshi_3643 0.86 -1.4
43,877 + Dshi_3643 0.87 -1.4
43,884 - Dshi_3643 0.87 +0.1
43,884 - Dshi_3643 0.87 -0.4
43,885 - Dshi_3643 0.87 -0.4
43,891 + Dshi_3643 0.88 +0.3
43,933 + -2.6
43,941 - -0.5
43,941 - -1.1
43,947 + -0.7
43,971 + -0.3
44,024 - -0.7
44,069 + +0.3
44,069 + -0.2
44,076 - -0.1
44,103 - -0.9
44,104 - +0.3
44,144 - Dshi_3644 0.14 -0.3
44,144 - Dshi_3644 0.14 -0.3
44,236 - Dshi_3644 0.25 -1.2
44,277 + Dshi_3644 0.30 -1.1
44,285 - Dshi_3644 0.31 -0.6
44,285 - Dshi_3644 0.31 +1.0
44,342 - Dshi_3644 0.38 +0.8
44,349 - Dshi_3644 0.39 -1.4
44,365 - Dshi_3644 0.41 +0.3
44,387 + Dshi_3644 0.44 -2.8
44,387 + Dshi_3644 0.44 -0.1
44,387 + Dshi_3644 0.44 -0.1
44,387 - Dshi_3644 0.44 +0.9
44,404 + Dshi_3644 0.46 -0.2
44,422 - Dshi_3644 0.48 -0.9
44,456 + Dshi_3644 0.52 -2.1
44,456 + Dshi_3644 0.52 -0.1
44,481 + Dshi_3644 0.56 -0.7
44,516 + Dshi_3644 0.60 +0.3
44,516 + Dshi_3644 0.60 -0.1
44,541 - Dshi_3644 0.63 +0.2
44,551 - Dshi_3644 0.64 -0.5
44,561 + Dshi_3644 0.65 -0.6
44,644 + Dshi_3644 0.76 -0.1
44,661 - Dshi_3644 0.78 +0.7
44,726 + Dshi_3644 0.86 -3.3
44,734 - Dshi_3644 0.87 +1.7
44,734 - Dshi_3644 0.87 -0.9
44,788 - +0.3
44,818 + +0.0
44,835 + +0.8
44,847 - -1.3
44,851 - -0.2
44,856 - -0.2
44,858 - -0.4
44,886 - -0.2
44,901 + -0.5
44,911 - -0.5
44,920 + -0.5
44,953 - Dshi_3645 0.15 +1.0
44,987 + Dshi_3645 0.20 +0.4
45,022 - Dshi_3645 0.25 +0.3
45,027 + Dshi_3645 0.26 -0.0
45,036 - Dshi_3645 0.28 -0.4
45,036 - Dshi_3645 0.28 +0.5
45,052 - Dshi_3645 0.30 -0.4
45,108 + Dshi_3645 0.39 -0.8
45,111 - Dshi_3645 0.39 +2.3
45,115 + Dshi_3645 0.40 -1.5
45,116 - Dshi_3645 0.40 +0.2
45,143 - Dshi_3645 0.44 -0.9
45,190 + Dshi_3645 0.51 +0.4
45,190 - Dshi_3645 0.51 +0.2
45,192 + Dshi_3645 0.51 -0.3
45,201 + Dshi_3645 0.53 -0.3
45,206 + Dshi_3645 0.53 -0.2
45,206 + Dshi_3645 0.53 -0.6
45,209 - Dshi_3645 0.54 +0.4
45,211 - Dshi_3645 0.54 +0.4
45,216 + Dshi_3645 0.55 +1.0
45,235 - Dshi_3645 0.58 +1.1
45,235 - Dshi_3645 0.58 -0.7
45,321 - Dshi_3645 0.71 +0.2
45,350 + Dshi_3645 0.75 -0.1
45,350 + Dshi_3645 0.75 +0.1
45,351 - Dshi_3645 0.75 -0.7
45,360 - Dshi_3645 0.77 +0.1
45,379 - Dshi_3645 0.80 +0.1
45,390 - Dshi_3645 0.81 -0.7
45,390 - Dshi_3645 0.81 -1.5
45,393 - Dshi_3645 0.82 -0.6
45,442 + Dshi_3645 0.89 -0.2
45,442 + Dshi_3645 0.89 -0.2
45,442 + Dshi_3645 0.89 -0.9
45,442 + Dshi_3645 0.89 -1.2
45,442 + Dshi_3645 0.89 -0.0
45,442 + Dshi_3645 0.89 -0.3
45,442 + Dshi_3645 0.89 +0.1
45,442 + Dshi_3645 0.89 -0.7
45,442 + Dshi_3645 0.89 +1.2
45,442 + Dshi_3645 0.89 -0.1
45,442 + Dshi_3645 0.89 -0.6
45,443 + Dshi_3645 0.89 -0.3
45,447 + +0.1
45,450 - -1.9
45,451 - -0.4
45,455 - -0.5
45,455 - -2.3
45,455 - -0.8
45,464 - -0.3
45,470 - +0.1
45,470 - -1.1
45,546 + -0.5
45,559 + +0.3
45,562 - -0.1
45,562 - +1.3
45,566 - -0.6
45,567 - -0.6
45,567 - +1.0
45,567 - +0.9
45,567 - -0.3
45,567 - -0.8
45,622 + Dshi_3646 0.16 +0.3
45,622 + Dshi_3646 0.16 -0.2
45,622 + Dshi_3646 0.16 -0.1
45,624 + Dshi_3646 0.16 +0.0
45,630 - Dshi_3646 0.17 -0.2
45,630 - Dshi_3646 0.17 -0.6
45,633 + Dshi_3646 0.17 -2.2
45,633 - Dshi_3646 0.17 -0.2
45,638 + Dshi_3646 0.18 -0.3
45,640 - Dshi_3646 0.18 -0.7
45,641 - Dshi_3646 0.18 -0.7
45,646 - Dshi_3646 0.19 +0.3
45,672 - Dshi_3646 0.23 +0.0
45,795 + Dshi_3646 0.41 -1.8
45,803 - Dshi_3646 0.42 -0.9

Or see this region's nucleotide sequence