Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3483

Experiment: m.b. Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nickel (II) chloride 1 mM
3,663,386	+		Dshi_3481	0.61	+1.5
3,663,386	+		Dshi_3481	0.61	+1.7
3,663,416	-		Dshi_3481	0.65	+0.6
3,663,467	+		Dshi_3481	0.72	+1.0
3,663,589	+		Dshi_3481	0.88	-1.0
3,663,692	+				-0.0
3,663,692	+				+0.0
3,663,700	-				+0.7
3,663,703	+				+1.1
3,663,708	+				-0.2
3,663,708	+				+1.3
3,663,715	-				+1.7
3,663,716	-				+0.5
3,663,731	-				+0.5
3,663,748	+		Dshi_3482	0.11	+2.3
3,663,756	-		Dshi_3482	0.12	+0.7
3,663,828	-		Dshi_3482	0.23	+1.3
3,663,880	+		Dshi_3482	0.30	-1.3
3,663,955	+		Dshi_3482	0.41	+0.8
3,663,963	-		Dshi_3482	0.42	+0.9
3,663,974	+		Dshi_3482	0.44	-0.2
3,663,982	-		Dshi_3482	0.45	-0.4
3,664,036	+		Dshi_3482	0.53	+0.5
3,664,040	+		Dshi_3482	0.53	+1.5
3,664,044	-		Dshi_3482	0.54	-0.4
3,664,051	+		Dshi_3482	0.55	+0.9
3,664,051	+		Dshi_3482	0.55	+0.4
3,664,082	-		Dshi_3482	0.59	+2.0
3,664,140	+		Dshi_3482	0.67	-0.0
3,664,205	+		Dshi_3482	0.77	+0.3
3,664,205	+		Dshi_3482	0.77	-0.1
3,664,205	+		Dshi_3482	0.77	+0.2
3,664,213	-		Dshi_3482	0.78	+0.5
3,664,251	+		Dshi_3482	0.83	+0.4
3,664,321	-				+0.4
3,664,394	+				+1.7
3,664,419	+				+1.0
3,664,419	-				+0.4
3,664,504	+		Dshi_3483	0.13	+0.2
3,664,648	+		Dshi_3483	0.26	-1.5
3,664,689	+		Dshi_3483	0.30	+1.4
3,664,689	+		Dshi_3483	0.30	+1.4
3,664,802	+		Dshi_3483	0.40	+0.9
3,664,815	-		Dshi_3483	0.42	+0.3
3,664,892	-		Dshi_3483	0.49	+0.6
3,664,913	-		Dshi_3483	0.51	+1.7
3,664,926	+		Dshi_3483	0.52	+1.2
3,664,962	+		Dshi_3483	0.55	+0.9
3,665,021	+		Dshi_3483	0.61	+0.4
3,665,021	+		Dshi_3483	0.61	+1.1
3,665,029	-		Dshi_3483	0.61	+0.2
3,665,029	-		Dshi_3483	0.61	+0.9
3,665,077	+		Dshi_3483	0.66	+1.0
3,665,120	+		Dshi_3483	0.70	-0.1
3,665,232	+		Dshi_3483	0.80	+0.3
3,665,320	+		Dshi_3483	0.88	-0.3
3,665,338	+				+0.6
3,665,344	-				+0.0
3,665,359	-				-0.3
3,665,390	-				+1.0
3,665,392	-				+0.3
3,665,408	-				+0.7
3,665,483	-				-0.3
3,665,494	+				+0.2
3,665,501	+				-0.3
3,665,565	-		Dshi_3484	0.26	-0.1
3,665,634	-		Dshi_3484	0.47	-1.0
3,665,659	-		Dshi_3484	0.55	+0.2
3,665,717	+		Dshi_3484	0.72	+1.0
3,665,761	-		Dshi_3484	0.85	-0.3
3,665,766	-		Dshi_3484	0.87	+0.3
3,665,799	-				-0.0
3,665,834	-				-0.3
3,665,844	+				-1.0
3,665,844	+				-0.3
3,665,849	+				-1.0
3,665,849	+				+1.5
3,665,849	+				+0.1
3,665,849	+				+0.3
3,665,852	-				+0.3
3,665,852	-				+0.4
3,665,852	-				+2.2
3,665,857	-				+0.7
3,665,857	-				-0.3
3,665,928	+				+0.9
3,665,928	+				-1.3
3,665,928	+				+0.4
3,665,928	+				+0.7
3,665,928	+				-0.6
3,665,936	-				+0.1
3,665,936	-				-0.4
3,665,936	-				+0.2
3,665,936	-				-0.5
3,665,936	-				-0.5
3,665,936	-				-0.9
3,665,937	-				+0.1
3,665,937	-				+0.0
3,665,937	-				-0.7
3,665,937	-				+0.1
3,665,937	-				-2.4
3,665,937	-				+0.8
3,665,958	+				-1.8
3,665,977	+				+0.1
3,665,984	+				-0.4
3,665,991	-				-0.5
3,665,998	+				+0.4
3,665,998	+				-1.4
3,666,003	+				-0.3
3,666,003	+				-1.7
3,666,006	-				-0.1
3,666,006	-				+0.2
3,666,016	-				-3.5
3,666,033	+				-0.1
3,666,040	+				-0.6
3,666,098	-		Dshi_3485	0.10	-0.4
3,666,107	+		Dshi_3485	0.11	-1.0
3,666,110	-		Dshi_3485	0.11	-0.8
3,666,177	+		Dshi_3485	0.17	-1.3
3,666,190	-		Dshi_3485	0.18	-0.3
3,666,192	+		Dshi_3485	0.18	+0.4
3,666,197	+		Dshi_3485	0.18	-1.2
3,666,197	+		Dshi_3485	0.18	+0.6
3,666,200	-		Dshi_3485	0.19	-0.3
3,666,200	-		Dshi_3485	0.19	-0.9
3,666,205	-		Dshi_3485	0.19	+0.4
3,666,205	-		Dshi_3485	0.19	+0.2
3,666,248	+		Dshi_3485	0.22	-1.1
3,666,251	-		Dshi_3485	0.23	+0.4
3,666,332	-		Dshi_3485	0.29	-0.5
3,666,378	+		Dshi_3485	0.33	-0.8
3,666,391	+		Dshi_3485	0.34	+0.2
3,666,395	-		Dshi_3485	0.34	+0.6
3,666,395	-		Dshi_3485	0.34	+0.2
3,666,423	+		Dshi_3485	0.36	-1.1