Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3394

Experiment: m.b. Nickel (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Nickel (II) chloride 1 mM
3,571,024	-				-1.9
3,571,046	-				-0.6
3,571,119	-		Dshi_3393	0.16	+0.1
3,571,119	-		Dshi_3393	0.16	-0.1
3,571,151	+		Dshi_3393	0.19	-0.9
3,571,159	-		Dshi_3393	0.19	-1.6
3,571,167	+		Dshi_3393	0.20	+0.4
3,571,244	+		Dshi_3393	0.27	-0.0
3,571,252	-		Dshi_3393	0.28	-0.4
3,571,282	+		Dshi_3393	0.31	-1.0
3,571,282	+		Dshi_3393	0.31	-0.0
3,571,310	+		Dshi_3393	0.33	+0.9
3,571,316	+		Dshi_3393	0.34	-1.3
3,571,318	-		Dshi_3393	0.34	-0.0
3,571,359	+		Dshi_3393	0.38	+0.7
3,571,372	+		Dshi_3393	0.39	-1.1
3,571,399	+		Dshi_3393	0.42	-0.5
3,571,408	+		Dshi_3393	0.42	-0.2
3,571,463	+		Dshi_3393	0.48	-3.3
3,571,509	-		Dshi_3393	0.52	+0.2
3,571,521	+		Dshi_3393	0.53	-0.1
3,571,608	-		Dshi_3393	0.61	-0.3
3,571,608	-		Dshi_3393	0.61	-0.6
3,571,608	-		Dshi_3393	0.61	-0.5
3,571,608	-		Dshi_3393	0.61	-0.8
3,571,633	+		Dshi_3393	0.63	+1.0
3,571,644	+		Dshi_3393	0.64	-0.9
3,571,652	+		Dshi_3393	0.65	-1.2
3,571,652	-		Dshi_3393	0.65	-0.8
3,571,660	-		Dshi_3393	0.66	-0.6
3,571,711	+		Dshi_3393	0.71	-1.7
3,571,711	+		Dshi_3393	0.71	+0.4
3,571,724	+		Dshi_3393	0.72	+0.3
3,571,770	+		Dshi_3393	0.76	-0.4
3,571,824	+		Dshi_3393	0.81	-0.9
3,571,824	+		Dshi_3393	0.81	-0.1
3,571,839	-		Dshi_3393	0.83	-0.2
3,571,865	+		Dshi_3393	0.85	-0.3
3,571,865	+		Dshi_3393	0.85	-0.8
3,571,882	-		Dshi_3393	0.87	-0.7
3,571,914	-		Dshi_3393	0.90	-0.5
3,571,915	-		Dshi_3393	0.90	-0.5
3,571,944	-				-1.4
3,571,946	-				+0.3
3,571,957	-				+0.4
3,571,957	-				-0.3
3,571,961	+				+1.7
3,571,969	-				-0.0
3,571,969	-				-0.5
3,571,993	-				+1.3
3,572,018	+				-0.1
3,572,018	+				-0.4
3,572,026	-				-0.2
3,572,026	-				+0.8
3,572,026	-				-1.0
3,572,038	-				-1.0
3,572,049	-				-0.1
3,572,050	-				+2.0
3,572,051	+				-0.4
3,572,091	-				-1.2
3,572,098	+				-1.2
3,572,181	+		Dshi_3394	0.16	-1.0
3,572,223	-		Dshi_3394	0.20	+1.1
3,572,244	+		Dshi_3394	0.22	+1.0
3,572,245	-		Dshi_3394	0.22	+1.3
3,572,256	+		Dshi_3394	0.23	-0.0
3,572,326	+		Dshi_3394	0.30	+0.6
3,572,347	-		Dshi_3394	0.32	-0.3
3,572,480	-		Dshi_3394	0.45	+1.6
3,572,579	-		Dshi_3394	0.55	+0.4
3,572,712	-		Dshi_3394	0.68	-0.2
3,572,727	+		Dshi_3394	0.70	+0.4
3,572,768	-		Dshi_3394	0.74	+0.2
3,572,788	+		Dshi_3394	0.76	+0.0
3,572,847	+		Dshi_3394	0.82	-1.9
3,572,855	-		Dshi_3394	0.82	-0.6
3,572,912	+		Dshi_3394	0.88	+0.2
3,573,039	-				+0.3
3,573,047	+				-0.5
3,573,055	-				+2.7
3,573,126	-				+0.2
3,573,151	+				-0.2
3,573,193	-				-2.0
3,573,196	-				-0.3
3,573,198	+				-0.5
3,573,250	+		Dshi_3395	0.11	+0.2
3,573,307	+		Dshi_3395	0.15	-0.7
3,573,355	+		Dshi_3395	0.19	-0.4
3,573,360	+		Dshi_3395	0.19	+1.2
3,573,363	-		Dshi_3395	0.19	+0.1
3,573,475	-		Dshi_3395	0.27	+0.9
3,573,478	+		Dshi_3395	0.27	-0.2
3,573,500	-		Dshi_3395	0.29	-0.1
3,573,500	-		Dshi_3395	0.29	-0.2
3,573,508	+		Dshi_3395	0.29	-1.7
3,573,583	-		Dshi_3395	0.34	-0.2
3,573,595	-		Dshi_3395	0.35	+0.3
3,573,602	-		Dshi_3395	0.36	-0.4
3,573,628	-		Dshi_3395	0.37	+0.6
3,573,628	-		Dshi_3395	0.37	-1.1
3,573,692	-		Dshi_3395	0.42	-0.7
3,573,704	-		Dshi_3395	0.43	-0.9
3,573,735	-		Dshi_3395	0.45	+0.3
3,573,774	-		Dshi_3395	0.48	+0.4
3,573,803	+		Dshi_3395	0.50	-0.9
3,573,816	-		Dshi_3395	0.50	-0.5
3,573,826	-		Dshi_3395	0.51	+0.2
3,573,830	+		Dshi_3395	0.51	-0.2
3,573,835	+		Dshi_3395	0.52	+2.1
3,573,835	+		Dshi_3395	0.52	-1.4
3,573,848	-		Dshi_3395	0.53	-0.3
3,573,887	+		Dshi_3395	0.55	-2.7
3,573,902	+		Dshi_3395	0.56	-0.6
3,573,902	+		Dshi_3395	0.56	+0.1
3,573,902	+		Dshi_3395	0.56	-0.5
3,573,910	-		Dshi_3395	0.57	-0.3
3,573,910	-		Dshi_3395	0.57	+0.1
3,574,028	-		Dshi_3395	0.65	+0.3