Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2472

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2471 and Dshi_2472 are separated by 17 nucleotidesDshi_2472 and Dshi_2473 overlap by 4 nucleotidesDshi_2473 and Dshi_2474 overlap by 4 nucleotides Dshi_2471: Dshi_2471 - UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq), at 2,622,969 to 2,624,450 _2471 Dshi_2472: Dshi_2472 - Peptidoglycan glycosyltransferase (RefSeq), at 2,624,468 to 2,626,261 _2472 Dshi_2473: Dshi_2473 - putative FtsL (RefSeq), at 2,626,258 to 2,626,614 _2473 Dshi_2474: Dshi_2474 - S-adenosyl-methyltransferase MraW (RefSeq), at 2,626,611 to 2,627,612 _2474 Position (kb) 2624 2625 2626 2627Strain fitness (log2 ratio) -1 0 1at 2624.514 kb on - strandat 2626.630 kb on + strandat 2626.655 kb on - strandat 2626.772 kb on + strand, within Dshi_2474at 2627.037 kb on - strand, within Dshi_2474at 2627.210 kb on - strand, within Dshi_2474

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,624,514 - -0.1
2,626,630 + -0.6
2,626,655 - +1.7
2,626,772 + Dshi_2474 0.16 +1.6
2,627,037 - Dshi_2474 0.43 -0.4
2,627,210 - Dshi_2474 0.60 +0.9

Or see this region's nucleotide sequence