Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2354
Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Nickel (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
2,486,683 | - | Dshi_2353 | 0.23 | +1.4 | |
2,486,805 | - | Dshi_2353 | 0.34 | +0.7 | |
2,487,044 | + | Dshi_2353 | 0.54 | -1.2 | |
2,487,381 | + | Dshi_2353 | 0.83 | +0.2 | |
2,487,432 | + | Dshi_2353 | 0.87 | +0.0 | |
2,487,461 | - | Dshi_2353 | 0.90 | -0.5 | |
2,487,563 | + | -0.0 | |||
2,487,793 | - | Dshi_2354 | 0.11 | -0.1 | |
2,487,881 | - | Dshi_2354 | 0.18 | -0.5 | |
2,487,922 | - | Dshi_2354 | 0.22 | +1.0 | |
2,488,040 | + | Dshi_2354 | 0.32 | +0.6 | |
2,488,189 | - | Dshi_2354 | 0.45 | +0.2 | |
2,488,496 | + | Dshi_2354 | 0.72 | +1.3 | |
2,488,562 | + | Dshi_2354 | 0.77 | +0.4 | |
2,488,631 | - | Dshi_2354 | 0.83 | +0.4 | |
2,488,638 | + | Dshi_2354 | 0.84 | +1.0 | |
2,488,638 | + | Dshi_2354 | 0.84 | -0.5 | |
2,488,684 | - | Dshi_2354 | 0.88 | +1.2 | |
2,488,709 | + | +0.5 | |||
2,488,756 | + | -0.7 | |||
2,488,801 | + | -0.9 | |||
2,488,824 | - | -0.0 | |||
2,489,210 | - | Dshi_2355 | 0.30 | +0.3 | |
2,489,269 | + | Dshi_2355 | 0.35 | -2.4 | |
2,489,287 | + | Dshi_2355 | 0.36 | -0.9 | |
2,489,314 | - | Dshi_2355 | 0.38 | -0.0 | |
2,489,318 | - | Dshi_2355 | 0.38 | -0.4 | |
2,489,323 | + | Dshi_2355 | 0.39 | -0.7 | |
2,489,532 | - | Dshi_2355 | 0.55 | -0.4 | |
2,489,602 | + | Dshi_2355 | 0.61 | +1.7 | |
2,489,767 | + | Dshi_2355 | 0.74 | +0.8 |
Or see this region's nucleotide sequence