Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2354

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2353 and Dshi_2354 are separated by 88 nucleotidesDshi_2354 and Dshi_2355 are separated by 10 nucleotides Dshi_2353: Dshi_2353 - protein of unknown function DUF1501 (RefSeq), at 2,486,413 to 2,487,582 _2353 Dshi_2354: Dshi_2354 - major facilitator superfamily MFS_1 (RefSeq), at 2,487,671 to 2,488,822 _2354 Dshi_2355: Dshi_2355 - VWA containing CoxE family protein (RefSeq), at 2,488,833 to 2,490,095 _2355 Position (kb) 2487 2488 2489Strain fitness (log2 ratio) -2 -1 0 1at 2486.683 kb on - strand, within Dshi_2353at 2486.805 kb on - strand, within Dshi_2353at 2487.044 kb on + strand, within Dshi_2353at 2487.381 kb on + strand, within Dshi_2353at 2487.432 kb on + strand, within Dshi_2353at 2487.461 kb on - strand, within Dshi_2353at 2487.563 kb on + strandat 2487.793 kb on - strand, within Dshi_2354at 2487.881 kb on - strand, within Dshi_2354at 2487.922 kb on - strand, within Dshi_2354at 2488.040 kb on + strand, within Dshi_2354at 2488.189 kb on - strand, within Dshi_2354at 2488.496 kb on + strand, within Dshi_2354at 2488.562 kb on + strand, within Dshi_2354at 2488.631 kb on - strand, within Dshi_2354at 2488.638 kb on + strand, within Dshi_2354at 2488.638 kb on + strand, within Dshi_2354at 2488.684 kb on - strand, within Dshi_2354at 2488.709 kb on + strandat 2488.756 kb on + strandat 2488.801 kb on + strandat 2488.824 kb on - strandat 2489.210 kb on - strand, within Dshi_2355at 2489.269 kb on + strand, within Dshi_2355at 2489.287 kb on + strand, within Dshi_2355at 2489.314 kb on - strand, within Dshi_2355at 2489.318 kb on - strand, within Dshi_2355at 2489.323 kb on + strand, within Dshi_2355at 2489.532 kb on - strand, within Dshi_2355at 2489.602 kb on + strand, within Dshi_2355at 2489.767 kb on + strand, within Dshi_2355

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,486,683 - Dshi_2353 0.23 +1.4
2,486,805 - Dshi_2353 0.34 +0.7
2,487,044 + Dshi_2353 0.54 -1.2
2,487,381 + Dshi_2353 0.83 +0.2
2,487,432 + Dshi_2353 0.87 +0.0
2,487,461 - Dshi_2353 0.90 -0.5
2,487,563 + -0.0
2,487,793 - Dshi_2354 0.11 -0.1
2,487,881 - Dshi_2354 0.18 -0.5
2,487,922 - Dshi_2354 0.22 +1.0
2,488,040 + Dshi_2354 0.32 +0.6
2,488,189 - Dshi_2354 0.45 +0.2
2,488,496 + Dshi_2354 0.72 +1.3
2,488,562 + Dshi_2354 0.77 +0.4
2,488,631 - Dshi_2354 0.83 +0.4
2,488,638 + Dshi_2354 0.84 +1.0
2,488,638 + Dshi_2354 0.84 -0.5
2,488,684 - Dshi_2354 0.88 +1.2
2,488,709 + +0.5
2,488,756 + -0.7
2,488,801 + -0.9
2,488,824 - -0.0
2,489,210 - Dshi_2355 0.30 +0.3
2,489,269 + Dshi_2355 0.35 -2.4
2,489,287 + Dshi_2355 0.36 -0.9
2,489,314 - Dshi_2355 0.38 -0.0
2,489,318 - Dshi_2355 0.38 -0.4
2,489,323 + Dshi_2355 0.39 -0.7
2,489,532 - Dshi_2355 0.55 -0.4
2,489,602 + Dshi_2355 0.61 +1.7
2,489,767 + Dshi_2355 0.74 +0.8

Or see this region's nucleotide sequence