Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1937
Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Nickel (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
2,025,006 | + | +0.1 | |||
2,025,052 | + | -0.0 | |||
2,025,098 | - | Dshi_1936 | 0.12 | +0.0 | |
2,025,235 | - | Dshi_1936 | 0.25 | +0.8 | |
2,025,279 | + | Dshi_1936 | 0.30 | -0.8 | |
2,025,487 | - | Dshi_1936 | 0.50 | +1.0 | |
2,025,590 | + | Dshi_1936 | 0.60 | -0.2 | |
2,025,645 | - | Dshi_1936 | 0.66 | +0.6 | |
2,025,724 | + | Dshi_1936 | 0.73 | -0.2 | |
2,025,745 | + | Dshi_1936 | 0.75 | -0.2 | |
2,025,791 | - | Dshi_1936 | 0.80 | -0.5 | |
2,025,896 | - | -0.5 | |||
2,025,926 | + | -0.8 | |||
2,026,090 | - | +0.0 | |||
2,026,304 | + | Dshi_1937 | 0.22 | -0.4 | |
2,026,397 | - | Dshi_1937 | 0.29 | -0.1 | |
2,026,403 | + | Dshi_1937 | 0.29 | -0.1 | |
2,026,465 | + | Dshi_1937 | 0.34 | -0.4 | |
2,026,617 | - | Dshi_1937 | 0.44 | +0.3 | |
2,026,642 | - | Dshi_1937 | 0.46 | -0.1 | |
2,026,677 | + | Dshi_1937 | 0.49 | +0.8 | |
2,026,757 | - | Dshi_1937 | 0.54 | -0.1 | |
2,027,290 | + | -0.5 | |||
2,027,298 | - | -0.2 | |||
2,027,358 | - | -1.4 | |||
2,027,358 | - | +0.2 | |||
2,027,358 | - | -0.5 | |||
2,027,439 | - | -1.7 | |||
2,027,504 | + | +1.0 | |||
2,027,515 | + | +1.2 | |||
2,027,701 | - | Dshi_1938 | 0.23 | +1.7 | |
2,027,752 | - | Dshi_1938 | 0.30 | +0.3 | |
2,027,854 | - | Dshi_1938 | 0.43 | +0.8 |
Or see this region's nucleotide sequence