Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1708 and Dshi_1709 are separated by 380 nucleotides Dshi_1709 and Dshi_1710 are separated by 230 nucleotides Dshi_1710 and Dshi_1711 overlap by 8 nucleotides Dshi_1711 and Dshi_1712 overlap by 1 nucleotides
Dshi_1708: Dshi_1708 - NERD domain protein (RefSeq), at 1,775,173 to 1,775,952
_1708
Dshi_1709: Dshi_1709 - MscS Mechanosensitive ion channel (RefSeq), at 1,776,333 to 1,777,817
_1709
Dshi_1710: Dshi_1710 - glutaredoxin-like protein (RefSeq), at 1,778,048 to 1,778,410
_1710
Dshi_1711: Dshi_1711 - hypothetical protein (RefSeq), at 1,778,403 to 1,778,669
_1711
Dshi_1712: Dshi_1712 - BolA family protein (RefSeq), at 1,778,669 to 1,778,902
_1712
Position (kb)
1776
1777
1778 Strain fitness (log2 ratio)
-1
0
1 at 1775.646 kb on + strand, within Dshi_1708 at 1775.760 kb on - strand, within Dshi_1708 at 1775.776 kb on + strand, within Dshi_1708 at 1776.317 kb on - strand at 1776.494 kb on + strand, within Dshi_1709 at 1776.577 kb on + strand, within Dshi_1709 at 1776.647 kb on - strand, within Dshi_1709 at 1776.784 kb on + strand, within Dshi_1709 at 1776.900 kb on - strand, within Dshi_1709 at 1776.975 kb on + strand, within Dshi_1709 at 1776.994 kb on + strand, within Dshi_1709 at 1777.002 kb on - strand, within Dshi_1709 at 1777.057 kb on - strand, within Dshi_1709 at 1777.179 kb on - strand, within Dshi_1709 at 1777.443 kb on - strand, within Dshi_1709 at 1777.572 kb on - strand, within Dshi_1709 at 1777.647 kb on + strand, within Dshi_1709 at 1777.806 kb on - strand at 1777.893 kb on + strand at 1778.098 kb on - strand, within Dshi_1710 at 1778.420 kb on - strand at 1778.610 kb on + strand, within Dshi_1711 at 1778.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 1,775,646 + Dshi_1708 0.61 -0.7 1,775,760 - Dshi_1708 0.75 -1.2 1,775,776 + Dshi_1708 0.77 -0.9 1,776,317 - -1.3 1,776,494 + Dshi_1709 0.11 -1.6 1,776,577 + Dshi_1709 0.16 -0.7 1,776,647 - Dshi_1709 0.21 -0.8 1,776,784 + Dshi_1709 0.30 +0.4 1,776,900 - Dshi_1709 0.38 -0.3 1,776,975 + Dshi_1709 0.43 -0.6 1,776,994 + Dshi_1709 0.45 -0.6 1,777,002 - Dshi_1709 0.45 -1.1 1,777,057 - Dshi_1709 0.49 +0.9 1,777,179 - Dshi_1709 0.57 -0.8 1,777,443 - Dshi_1709 0.75 -0.1 1,777,572 - Dshi_1709 0.83 +0.8 1,777,647 + Dshi_1709 0.88 +0.6 1,777,806 - +0.1 1,777,893 + -0.5 1,778,098 - Dshi_1710 0.14 -0.8 1,778,420 - -0.4 1,778,610 + Dshi_1711 0.78 -1.3 1,778,662 - -0.5
Or see this region's nucleotide sequence