Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1704 and Dshi_1705 are separated by 28 nucleotides Dshi_1705 and Dshi_1706 overlap by 35 nucleotides Dshi_1706 and Dshi_1707 overlap by 1 nucleotides Dshi_1707 and Dshi_1708 are separated by 6 nucleotides
Dshi_1704: Dshi_1704 - periplasmic solute binding protein (RefSeq), at 1,772,514 to 1,773,584
_1704
Dshi_1705: Dshi_1705 - hypothetical protein (RefSeq), at 1,773,613 to 1,773,951
_1705
Dshi_1706: Dshi_1706 - methionine-R-sulfoxide reductase (RefSeq), at 1,773,917 to 1,774,366
_1706
Dshi_1707: Dshi_1707 - putative hemolysin (RefSeq), at 1,774,366 to 1,775,166
_1707
Dshi_1708: Dshi_1708 - NERD domain protein (RefSeq), at 1,775,173 to 1,775,952
_1708
Position (kb)
1774
1775
1776 Strain fitness (log2 ratio)
-1
0
1 at 1773.392 kb on + strand, within Dshi_1704 at 1773.445 kb on + strand, within Dshi_1704 at 1773.449 kb on + strand, within Dshi_1704 at 1773.476 kb on + strand, within Dshi_1704 at 1773.586 kb on - strand at 1773.618 kb on - strand at 1773.838 kb on + strand, within Dshi_1705 at 1773.851 kb on - strand, within Dshi_1705 at 1773.851 kb on - strand, within Dshi_1705 at 1773.858 kb on + strand, within Dshi_1705 at 1773.973 kb on + strand, within Dshi_1706 at 1773.997 kb on + strand, within Dshi_1706 at 1774.025 kb on + strand, within Dshi_1706 at 1774.265 kb on - strand, within Dshi_1706 at 1774.390 kb on - strand at 1774.392 kb on + strand at 1774.671 kb on + strand, within Dshi_1707 at 1774.763 kb on + strand, within Dshi_1707 at 1774.782 kb on - strand, within Dshi_1707 at 1775.646 kb on + strand, within Dshi_1708 at 1775.760 kb on - strand, within Dshi_1708 at 1775.776 kb on + strand, within Dshi_1708
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 1,773,392 + Dshi_1704 0.82 +0.5 1,773,445 + Dshi_1704 0.87 -0.8 1,773,449 + Dshi_1704 0.87 -1.6 1,773,476 + Dshi_1704 0.90 +0.3 1,773,586 - +0.2 1,773,618 - -0.1 1,773,838 + Dshi_1705 0.66 -0.6 1,773,851 - Dshi_1705 0.70 -0.2 1,773,851 - Dshi_1705 0.70 +0.1 1,773,858 + Dshi_1705 0.72 -1.1 1,773,973 + Dshi_1706 0.12 -1.3 1,773,997 + Dshi_1706 0.18 -0.7 1,774,025 + Dshi_1706 0.24 -0.0 1,774,265 - Dshi_1706 0.77 -0.6 1,774,390 - +0.8 1,774,392 + +0.5 1,774,671 + Dshi_1707 0.38 +1.4 1,774,763 + Dshi_1707 0.50 -0.9 1,774,782 - Dshi_1707 0.52 -0.7 1,775,646 + Dshi_1708 0.61 -0.7 1,775,760 - Dshi_1708 0.75 -1.2 1,775,776 + Dshi_1708 0.77 -0.9
Or see this region's nucleotide sequence