Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1618
Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Nickel (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
1,681,227 | - | Dshi_1616 | 0.45 | +1.1 | |
1,681,349 | - | Dshi_1616 | 0.55 | -1.5 | |
1,681,364 | - | Dshi_1616 | 0.56 | -0.1 | |
1,681,364 | - | Dshi_1616 | 0.56 | -1.1 | |
1,681,395 | + | Dshi_1616 | 0.59 | +0.8 | |
1,681,829 | - | -0.4 | |||
1,681,829 | - | +0.1 | |||
1,681,917 | + | -0.2 | |||
1,682,049 | + | Dshi_1617 | 0.56 | -0.5 | |
1,682,049 | + | Dshi_1617 | 0.56 | +1.4 | |
1,682,107 | + | Dshi_1617 | 0.78 | +1.4 | |
1,682,209 | - | +0.2 | |||
1,683,392 | + | -0.8 | |||
1,683,410 | - | -0.4 | |||
1,683,433 | + | +0.3 | |||
1,683,667 | + | Dshi_1619 | 0.19 | +0.0 | |
1,683,707 | - | Dshi_1619 | 0.21 | +1.4 | |
1,683,768 | + | Dshi_1619 | 0.25 | +0.6 | |
1,683,794 | + | Dshi_1619 | 0.27 | -1.2 | |
1,683,836 | - | Dshi_1619 | 0.29 | +1.0 | |
1,683,865 | + | Dshi_1619 | 0.31 | -0.2 | |
1,683,883 | + | Dshi_1619 | 0.32 | +0.3 | |
1,684,025 | + | Dshi_1619 | 0.41 | +0.2 | |
1,684,098 | - | Dshi_1619 | 0.45 | +0.1 | |
1,684,172 | - | Dshi_1619 | 0.50 | +0.0 | |
1,684,237 | + | Dshi_1619 | 0.54 | -0.3 | |
1,684,245 | - | Dshi_1619 | 0.55 | +0.4 |
Or see this region's nucleotide sequence