Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1342 and Dshi_1343 are separated by 193 nucleotides Dshi_1343 and Dshi_1344 are separated by 18 nucleotides Dshi_1344 and Dshi_1345 are separated by 8 nucleotides Dshi_1345 and Dshi_1346 overlap by 4 nucleotides Dshi_1346 and Dshi_1347 are separated by 97 nucleotides
Dshi_1342: Dshi_1342 - Helix-turn-helix type 11 domain protein (RefSeq), at 1,395,858 to 1,396,517
_1342
Dshi_1343: Dshi_1343 - sec-independent translocation protein mttA/Hcf106 (RefSeq), at 1,396,711 to 1,396,935
_1343
Dshi_1344: Dshi_1344 - twin-arginine translocation protein, TatB subunit (RefSeq), at 1,396,954 to 1,397,421
_1344
Dshi_1345: Dshi_1345 - Sec-independent protein translocase, TatC subunit (RefSeq), at 1,397,430 to 1,398,470
_1345
Dshi_1346: Dshi_1346 - protein of unknown function DUF815 (RefSeq), at 1,398,467 to 1,399,318
_1346
Dshi_1347: Dshi_1347 - hypothetical protein (RefSeq), at 1,399,416 to 1,400,000
_1347
Position (kb)
1397
1398
1399 Strain fitness (log2 ratio)
-2
-1
0
1 at 1396.485 kb on + strand at 1396.510 kb on - strand at 1398.650 kb on + strand, within Dshi_1346 at 1398.712 kb on + strand, within Dshi_1346 at 1398.712 kb on + strand, within Dshi_1346 at 1398.748 kb on + strand, within Dshi_1346 at 1398.893 kb on + strand, within Dshi_1346 at 1399.028 kb on + strand, within Dshi_1346 at 1399.206 kb on + strand, within Dshi_1346 at 1399.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 1,396,485 + -0.4 1,396,510 - -0.7 1,398,650 + Dshi_1346 0.21 -0.0 1,398,712 + Dshi_1346 0.29 -0.6 1,398,712 + Dshi_1346 0.29 -1.0 1,398,748 + Dshi_1346 0.33 -1.1 1,398,893 + Dshi_1346 0.50 -0.1 1,399,028 + Dshi_1346 0.66 -2.0 1,399,206 + Dshi_1346 0.87 -0.8 1,399,240 - +0.4
Or see this region's nucleotide sequence