Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1170

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1169 and Dshi_1170 overlap by 7 nucleotidesDshi_1170 and Dshi_1171 are separated by 171 nucleotides Dshi_1169: Dshi_1169 - N-acetylmuramoyl-L-alanine amidase (RefSeq), at 1,199,349 to 1,200,617 _1169 Dshi_1170: Dshi_1170 - Methyltransferase type 11 (RefSeq), at 1,200,611 to 1,201,234 _1170 Dshi_1171: Dshi_1171 - penicillin-binding protein, 1A family (RefSeq), at 1,201,406 to 1,203,928 _1171 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -1 0 1at 1199.729 kb on + strand, within Dshi_1169at 1199.767 kb on + strand, within Dshi_1169at 1199.890 kb on - strand, within Dshi_1169at 1199.935 kb on + strand, within Dshi_1169at 1199.997 kb on + strand, within Dshi_1169at 1200.054 kb on - strand, within Dshi_1169at 1200.054 kb on - strand, within Dshi_1169at 1200.092 kb on + strand, within Dshi_1169at 1200.113 kb on - strand, within Dshi_1169at 1200.336 kb on - strand, within Dshi_1169at 1200.438 kb on + strand, within Dshi_1169at 1200.645 kb on + strandat 1200.698 kb on - strand, within Dshi_1170at 1200.899 kb on + strand, within Dshi_1170at 1200.907 kb on - strand, within Dshi_1170at 1200.927 kb on + strand, within Dshi_1170at 1201.032 kb on - strand, within Dshi_1170at 1201.235 kb on + strandat 1201.235 kb on + strandat 1201.296 kb on + strandat 1201.304 kb on - strandat 1201.363 kb on - strandat 1201.363 kb on - strandat 1202.168 kb on + strand, within Dshi_1171

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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1,199,729 + Dshi_1169 0.30 -0.2
1,199,767 + Dshi_1169 0.33 +0.7
1,199,890 - Dshi_1169 0.43 +0.3
1,199,935 + Dshi_1169 0.46 -0.2
1,199,997 + Dshi_1169 0.51 -0.4
1,200,054 - Dshi_1169 0.56 -1.6
1,200,054 - Dshi_1169 0.56 +0.5
1,200,092 + Dshi_1169 0.59 -0.9
1,200,113 - Dshi_1169 0.60 -0.1
1,200,336 - Dshi_1169 0.78 -1.3
1,200,438 + Dshi_1169 0.86 +1.0
1,200,645 + -0.3
1,200,698 - Dshi_1170 0.14 -1.4
1,200,899 + Dshi_1170 0.46 +0.3
1,200,907 - Dshi_1170 0.47 +0.6
1,200,927 + Dshi_1170 0.51 -0.3
1,201,032 - Dshi_1170 0.67 -0.1
1,201,235 + +0.2
1,201,235 + -0.3
1,201,296 + -0.2
1,201,304 - +0.3
1,201,363 - -0.5
1,201,363 - +0.2
1,202,168 + Dshi_1171 0.30 +0.0

Or see this region's nucleotide sequence