Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0870

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0868 and Dshi_0869 are separated by 11 nucleotidesDshi_0869 and Dshi_0870 are separated by 11 nucleotidesDshi_0870 and Dshi_0871 are separated by 73 nucleotidesDshi_0871 and Dshi_0872 are separated by 86 nucleotides Dshi_0868: Dshi_0868 - putative peptidase (RefSeq), at 883,631 to 885,007 _0868 Dshi_0869: Dshi_0869 - hypothetical protein (RefSeq), at 885,019 to 885,909 _0869 Dshi_0870: Dshi_0870 - transcriptional regulator, SARP family (RefSeq), at 885,921 to 887,960 _0870 Dshi_0871: Dshi_0871 - hypothetical protein (RefSeq), at 888,034 to 888,300 _0871 Dshi_0872: Dshi_0872 - extracellular solute-binding protein family 5 (RefSeq), at 888,387 to 889,970 _0872 Position (kb) 885 886 887 888Strain fitness (log2 ratio) -2 -1 0 1 2at 884.960 kb on + strandat 885.129 kb on - strand, within Dshi_0869at 885.130 kb on - strand, within Dshi_0869at 885.141 kb on + strand, within Dshi_0869at 885.226 kb on + strand, within Dshi_0869at 885.238 kb on + strand, within Dshi_0869at 885.306 kb on + strand, within Dshi_0869at 885.564 kb on - strand, within Dshi_0869at 885.569 kb on - strand, within Dshi_0869at 885.611 kb on + strand, within Dshi_0869at 885.753 kb on - strand, within Dshi_0869at 885.774 kb on - strand, within Dshi_0869at 885.774 kb on - strand, within Dshi_0869at 885.913 kb on - strandat 885.953 kb on - strandat 886.001 kb on + strandat 886.009 kb on - strandat 886.058 kb on - strandat 886.077 kb on - strandat 886.081 kb on + strandat 886.087 kb on - strandat 886.249 kb on - strand, within Dshi_0870at 886.264 kb on + strand, within Dshi_0870at 886.273 kb on + strand, within Dshi_0870at 886.505 kb on - strand, within Dshi_0870at 886.531 kb on - strand, within Dshi_0870at 886.531 kb on - strand, within Dshi_0870at 886.532 kb on - strand, within Dshi_0870at 886.550 kb on + strand, within Dshi_0870at 886.563 kb on - strand, within Dshi_0870at 886.622 kb on - strand, within Dshi_0870at 886.632 kb on - strand, within Dshi_0870at 886.634 kb on + strand, within Dshi_0870at 886.767 kb on - strand, within Dshi_0870at 886.790 kb on + strand, within Dshi_0870at 886.800 kb on + strand, within Dshi_0870at 886.808 kb on - strand, within Dshi_0870at 886.808 kb on - strand, within Dshi_0870at 886.810 kb on + strand, within Dshi_0870at 886.870 kb on - strand, within Dshi_0870at 886.871 kb on - strand, within Dshi_0870at 886.888 kb on - strand, within Dshi_0870at 886.888 kb on - strand, within Dshi_0870at 886.888 kb on - strandat 886.899 kb on + strand, within Dshi_0870at 886.942 kb on - strand, within Dshi_0870at 886.943 kb on - strand, within Dshi_0870at 886.963 kb on - strand, within Dshi_0870at 887.055 kb on - strand, within Dshi_0870at 887.057 kb on + strand, within Dshi_0870at 887.057 kb on + strand, within Dshi_0870at 887.088 kb on + strand, within Dshi_0870at 887.088 kb on + strand, within Dshi_0870at 887.091 kb on - strand, within Dshi_0870at 887.096 kb on - strand, within Dshi_0870at 887.096 kb on - strand, within Dshi_0870at 887.117 kb on + strand, within Dshi_0870at 887.152 kb on - strand, within Dshi_0870at 887.156 kb on + strand, within Dshi_0870at 887.202 kb on + strand, within Dshi_0870at 887.276 kb on + strand, within Dshi_0870at 887.320 kb on - strand, within Dshi_0870at 887.362 kb on + strand, within Dshi_0870at 887.436 kb on - strand, within Dshi_0870at 887.571 kb on + strand, within Dshi_0870at 887.572 kb on + strand, within Dshi_0870at 887.614 kb on + strand, within Dshi_0870at 887.662 kb on + strand, within Dshi_0870at 887.662 kb on + strand, within Dshi_0870at 887.672 kb on + strand, within Dshi_0870at 887.680 kb on - strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.710 kb on - strand, within Dshi_0870at 887.715 kb on - strand, within Dshi_0870at 887.720 kb on - strand, within Dshi_0870at 887.729 kb on + strand, within Dshi_0870at 887.758 kb on - strandat 887.774 kb on + strandat 887.792 kb on - strandat 887.823 kb on - strandat 887.845 kb on + strandat 887.849 kb on + strandat 887.889 kb on + strandat 887.936 kb on - strandat 888.220 kb on - strand, within Dshi_0871at 888.229 kb on + strand, within Dshi_0871at 888.319 kb on + strandat 888.319 kb on + strandat 888.319 kb on + strandat 888.319 kb on + strandat 888.319 kb on + strandat 888.319 kb on + strandat 888.327 kb on - strandat 888.327 kb on - strandat 888.327 kb on - strandat 888.334 kb on - strandat 888.456 kb on + strandat 888.504 kb on + strandat 888.531 kb on - strandat 888.537 kb on + strandat 888.550 kb on - strand, within Dshi_0872at 888.557 kb on + strand, within Dshi_0872at 888.589 kb on - strand, within Dshi_0872at 888.616 kb on + strandat 888.650 kb on + strand, within Dshi_0872at 888.657 kb on + strand, within Dshi_0872at 888.696 kb on + strand, within Dshi_0872at 888.854 kb on - strand, within Dshi_0872at 888.861 kb on + strand, within Dshi_0872at 888.866 kb on + strand, within Dshi_0872at 888.874 kb on - strand, within Dshi_0872

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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884,960 + +0.7
885,129 - Dshi_0869 0.12 -0.1
885,130 - Dshi_0869 0.12 -0.8
885,141 + Dshi_0869 0.14 -0.3
885,226 + Dshi_0869 0.23 +0.4
885,238 + Dshi_0869 0.25 +1.5
885,306 + Dshi_0869 0.32 +0.0
885,564 - Dshi_0869 0.61 +1.0
885,569 - Dshi_0869 0.62 -2.4
885,611 + Dshi_0869 0.66 +0.4
885,753 - Dshi_0869 0.82 +0.2
885,774 - Dshi_0869 0.85 +1.3
885,774 - Dshi_0869 0.85 +0.8
885,913 - -0.5
885,953 - +0.0
886,001 + -1.2
886,009 - +0.7
886,058 - +1.1
886,077 - -1.3
886,081 + -0.1
886,087 - +0.6
886,249 - Dshi_0870 0.16 +0.4
886,264 + Dshi_0870 0.17 -1.2
886,273 + Dshi_0870 0.17 +0.3
886,505 - Dshi_0870 0.29 +0.2
886,531 - Dshi_0870 0.30 -0.2
886,531 - Dshi_0870 0.30 -0.0
886,532 - Dshi_0870 0.30 +0.2
886,550 + Dshi_0870 0.31 +0.1
886,563 - Dshi_0870 0.31 +0.3
886,622 - Dshi_0870 0.34 -1.7
886,632 - Dshi_0870 0.35 +0.3
886,634 + Dshi_0870 0.35 +1.0
886,767 - Dshi_0870 0.41 -0.8
886,790 + Dshi_0870 0.43 +0.4
886,800 + Dshi_0870 0.43 -0.1
886,808 - Dshi_0870 0.43 +2.2
886,808 - Dshi_0870 0.43 -1.2
886,810 + Dshi_0870 0.44 -0.4
886,870 - Dshi_0870 0.47 -0.2
886,871 - Dshi_0870 0.47 +0.2
886,888 - Dshi_0870 0.47 +0.3
886,888 - Dshi_0870 0.47 +0.0
886,888 - -0.2
886,899 + Dshi_0870 0.48 -1.1
886,942 - Dshi_0870 0.50 +0.8
886,943 - Dshi_0870 0.50 -0.2
886,963 - Dshi_0870 0.51 -0.9
887,055 - Dshi_0870 0.56 -1.4
887,057 + Dshi_0870 0.56 -0.7
887,057 + Dshi_0870 0.56 -0.2
887,088 + Dshi_0870 0.57 -0.5
887,088 + Dshi_0870 0.57 +0.7
887,091 - Dshi_0870 0.57 -1.2
887,096 - Dshi_0870 0.58 -1.0
887,096 - Dshi_0870 0.58 +0.1
887,117 + Dshi_0870 0.59 +0.4
887,152 - Dshi_0870 0.60 +0.6
887,156 + Dshi_0870 0.61 +0.4
887,202 + Dshi_0870 0.63 +0.3
887,276 + Dshi_0870 0.66 -0.1
887,320 - Dshi_0870 0.69 -0.7
887,362 + Dshi_0870 0.71 -0.6
887,436 - Dshi_0870 0.74 +0.7
887,571 + Dshi_0870 0.81 +0.9
887,572 + Dshi_0870 0.81 +0.2
887,614 + Dshi_0870 0.83 +1.6
887,662 + Dshi_0870 0.85 +0.3
887,662 + Dshi_0870 0.85 +0.6
887,672 + Dshi_0870 0.86 -0.3
887,680 - Dshi_0870 0.86 +0.4
887,707 + Dshi_0870 0.88 -2.5
887,707 + Dshi_0870 0.88 -1.3
887,707 + Dshi_0870 0.88 -0.5
887,707 + Dshi_0870 0.88 -1.0
887,707 + Dshi_0870 0.88 +1.5
887,710 - Dshi_0870 0.88 -0.7
887,715 - Dshi_0870 0.88 -0.6
887,720 - Dshi_0870 0.88 +0.6
887,729 + Dshi_0870 0.89 +0.0
887,758 - -2.2
887,774 + -0.4
887,792 - +0.4
887,823 - -2.1
887,845 + +0.6
887,849 + -0.0
887,889 + +0.1
887,936 - -0.5
888,220 - Dshi_0871 0.70 -1.4
888,229 + Dshi_0871 0.73 -1.0
888,319 + -1.4
888,319 + -0.8
888,319 + -0.2
888,319 + -1.0
888,319 + -0.8
888,319 + -0.8
888,327 - -0.4
888,327 - +0.8
888,327 - -0.6
888,334 - -1.2
888,456 + +0.2
888,504 + -0.4
888,531 - +0.6
888,537 + +0.9
888,550 - Dshi_0872 0.10 -1.6
888,557 + Dshi_0872 0.11 -0.8
888,589 - Dshi_0872 0.13 +0.0
888,616 + +1.0
888,650 + Dshi_0872 0.17 +0.0
888,657 + Dshi_0872 0.17 +0.3
888,696 + Dshi_0872 0.20 -0.7
888,854 - Dshi_0872 0.29 -0.9
888,861 + Dshi_0872 0.30 -1.0
888,866 + Dshi_0872 0.30 -0.6
888,874 - Dshi_0872 0.31 -0.1

Or see this region's nucleotide sequence