Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0784

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0783 and Dshi_0784 are separated by 131 nucleotidesDshi_0784 and Dshi_0785 are separated by 48 nucleotidesDshi_0785 and Dshi_0786 are separated by 307 nucleotides Dshi_0783: Dshi_0783 - helicase domain protein (RefSeq), at 787,616 to 790,579 _0783 Dshi_0784: Dshi_0784 - RNA-binding S4 (RefSeq), at 790,711 to 790,959 _0784 Dshi_0785: Dshi_0785 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 791,008 to 791,346 _0785 Dshi_0786: Dshi_0786 - transcriptional regulator, CarD family (RefSeq), at 791,654 to 792,166 _0786 Position (kb) 790 791Strain fitness (log2 ratio) -1 0 1at 789.762 kb on - strand, within Dshi_0783at 789.847 kb on - strand, within Dshi_0783at 789.861 kb on + strand, within Dshi_0783at 789.938 kb on + strand, within Dshi_0783at 790.326 kb on - strandat 790.894 kb on + strand, within Dshi_0784

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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789,762 - Dshi_0783 0.72 +0.8
789,847 - Dshi_0783 0.75 +0.7
789,861 + Dshi_0783 0.76 +0.2
789,938 + Dshi_0783 0.78 -0.4
790,326 - +1.3
790,894 + Dshi_0784 0.73 -1.2

Or see this region's nucleotide sequence