Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0728 and Dshi_0729 overlap by 4 nucleotides Dshi_0729 and Dshi_0730 overlap by 1 nucleotides Dshi_0730 and Dshi_0731 overlap by 4 nucleotides Dshi_0731 and Dshi_0732 overlap by 4 nucleotides Dshi_0732 and Dshi_0733 overlap by 8 nucleotides Dshi_0733 and Dshi_0734 overlap by 4 nucleotides
Dshi_0728: Dshi_0728 - NADH dehydrogenase (quinone) (RefSeq), at 737,004 to 739,244
_0728
Dshi_0729: Dshi_0729 - Na+/H+ antiporter MnhB subunit-related protein (RefSeq), at 739,241 to 739,693
_0729
Dshi_0730: Dshi_0730 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 739,693 to 740,112
_0730
Dshi_0731: Dshi_0731 - NADH dehydrogenase (quinone) (RefSeq), at 740,109 to 741,644
_0731
Dshi_0732: Dshi_0732 - cation antiporter (RefSeq), at 741,641 to 741,994
_0732
Dshi_0733: Dshi_0733 - multiple resistance and pH regulation protein F (RefSeq), at 741,987 to 742,343
_0733
Dshi_0734: Dshi_0734 - monovalent cation/proton antiporter, MnhG/PhaG subunit (RefSeq), at 742,340 to 742,687
_0734
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 739.129 kb on + strand at 739.140 kb on - strand at 739.149 kb on - strand at 739.150 kb on - strand at 739.212 kb on - strand at 739.255 kb on + strand at 739.338 kb on + strand, within Dshi_0729 at 739.596 kb on + strand, within Dshi_0729 at 739.757 kb on - strand, within Dshi_0730 at 739.784 kb on + strand, within Dshi_0730 at 739.871 kb on + strand, within Dshi_0730 at 739.951 kb on + strand, within Dshi_0730 at 739.951 kb on - strand, within Dshi_0730 at 740.056 kb on + strand, within Dshi_0730 at 740.073 kb on + strand at 740.128 kb on + strand at 740.224 kb on + strand at 740.258 kb on - strand at 740.264 kb on + strand, within Dshi_0731 at 740.270 kb on - strand, within Dshi_0731 at 740.272 kb on - strand, within Dshi_0731 at 740.272 kb on - strand, within Dshi_0731 at 740.430 kb on + strand, within Dshi_0731 at 740.437 kb on + strand, within Dshi_0731 at 740.652 kb on + strand, within Dshi_0731 at 740.660 kb on + strand, within Dshi_0731 at 740.772 kb on + strand, within Dshi_0731 at 740.855 kb on + strand, within Dshi_0731 at 740.858 kb on - strand, within Dshi_0731 at 740.932 kb on + strand, within Dshi_0731 at 740.945 kb on - strand, within Dshi_0731 at 741.033 kb on + strand, within Dshi_0731 at 741.048 kb on - strand, within Dshi_0731 at 741.132 kb on + strand, within Dshi_0731 at 741.154 kb on + strand, within Dshi_0731 at 741.154 kb on + strand, within Dshi_0731 at 741.303 kb on - strand, within Dshi_0731 at 741.310 kb on + strand, within Dshi_0731 at 741.347 kb on + strand, within Dshi_0731 at 741.472 kb on - strand, within Dshi_0731 at 741.506 kb on + strand at 741.514 kb on - strand at 741.554 kb on + strand at 741.577 kb on + strand at 741.577 kb on + strand at 741.604 kb on - strand at 741.734 kb on - strand, within Dshi_0732 at 741.763 kb on + strand, within Dshi_0732 at 742.122 kb on - strand, within Dshi_0733 at 742.141 kb on + strand, within Dshi_0733 at 742.375 kb on + strand, within Dshi_0734 at 742.470 kb on + strand, within Dshi_0734 at 742.518 kb on - strand, within Dshi_0734 at 742.578 kb on + strand, within Dshi_0734 at 742.601 kb on + strand, within Dshi_0734 at 742.628 kb on + strand, within Dshi_0734 at 742.629 kb on - strand, within Dshi_0734
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 739,129 + +0.4 739,140 - -0.1 739,149 - -0.4 739,150 - -1.5 739,212 - +0.9 739,255 + +0.6 739,338 + Dshi_0729 0.21 -0.1 739,596 + Dshi_0729 0.78 -0.5 739,757 - Dshi_0730 0.15 -0.1 739,784 + Dshi_0730 0.22 -0.2 739,871 + Dshi_0730 0.42 +1.1 739,951 + Dshi_0730 0.61 -1.8 739,951 - Dshi_0730 0.61 -0.1 740,056 + Dshi_0730 0.86 -1.8 740,073 + +0.2 740,128 + -0.3 740,224 + -0.1 740,258 - -0.3 740,264 + Dshi_0731 0.10 +0.1 740,270 - Dshi_0731 0.10 -1.5 740,272 - Dshi_0731 0.11 -0.8 740,272 - Dshi_0731 0.11 -0.1 740,430 + Dshi_0731 0.21 -0.3 740,437 + Dshi_0731 0.21 -0.1 740,652 + Dshi_0731 0.35 -2.3 740,660 + Dshi_0731 0.36 -0.7 740,772 + Dshi_0731 0.43 +0.2 740,855 + Dshi_0731 0.49 +0.7 740,858 - Dshi_0731 0.49 -0.4 740,932 + Dshi_0731 0.54 -1.8 740,945 - Dshi_0731 0.54 +0.3 741,033 + Dshi_0731 0.60 +0.7 741,048 - Dshi_0731 0.61 +0.5 741,132 + Dshi_0731 0.67 +0.2 741,154 + Dshi_0731 0.68 +0.9 741,154 + Dshi_0731 0.68 -1.2 741,303 - Dshi_0731 0.78 -1.7 741,310 + Dshi_0731 0.78 -0.4 741,347 + Dshi_0731 0.81 +0.7 741,472 - Dshi_0731 0.89 -0.2 741,506 + -0.2 741,514 - -1.5 741,554 + +0.7 741,577 + -0.7 741,577 + +0.2 741,604 - -1.0 741,734 - Dshi_0732 0.26 -0.6 741,763 + Dshi_0732 0.34 -0.9 742,122 - Dshi_0733 0.38 -1.2 742,141 + Dshi_0733 0.43 -3.3 742,375 + Dshi_0734 0.10 +0.1 742,470 + Dshi_0734 0.37 -0.5 742,518 - Dshi_0734 0.51 -0.2 742,578 + Dshi_0734 0.68 -0.1 742,601 + Dshi_0734 0.75 -0.9 742,628 + Dshi_0734 0.83 -0.4 742,629 - Dshi_0734 0.83 -1.9
Or see this region's nucleotide sequence