Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0460

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0458 and Dshi_0459 overlap by 8 nucleotidesDshi_0459 and Dshi_0460 overlap by 4 nucleotidesDshi_0460 and Dshi_0461 overlap by 4 nucleotidesDshi_0461 and Dshi_0462 overlap by 4 nucleotides Dshi_0458: Dshi_0458 - hypothetical protein (RefSeq), at 444,897 to 445,268 _0458 Dshi_0459: Dshi_0459 - von Willebrand factor type A (RefSeq), at 445,261 to 446,223 _0459 Dshi_0460: Dshi_0460 - hypothetical protein (RefSeq), at 446,220 to 447,119 _0460 Dshi_0461: Dshi_0461 - hypothetical protein (RefSeq), at 447,116 to 447,790 _0461 Dshi_0462: Dshi_0462 - hypothetical protein (RefSeq), at 447,787 to 448,983 _0462 Position (kb) 446 447 448Strain fitness (log2 ratio) -2 -1 0 1at 445.288 kb on - strandat 445.293 kb on + strandat 445.313 kb on - strandat 445.360 kb on - strand, within Dshi_0459at 445.371 kb on - strand, within Dshi_0459at 445.384 kb on + strand, within Dshi_0459at 445.385 kb on + strand, within Dshi_0459at 445.422 kb on + strand, within Dshi_0459at 445.611 kb on + strand, within Dshi_0459at 445.628 kb on - strand, within Dshi_0459at 445.629 kb on - strand, within Dshi_0459at 445.657 kb on + strand, within Dshi_0459at 445.665 kb on - strand, within Dshi_0459at 445.667 kb on + strand, within Dshi_0459at 445.706 kb on - strand, within Dshi_0459at 445.775 kb on - strand, within Dshi_0459at 445.799 kb on + strand, within Dshi_0459at 445.799 kb on + strand, within Dshi_0459at 445.799 kb on + strand, within Dshi_0459at 445.805 kb on + strand, within Dshi_0459at 445.807 kb on - strand, within Dshi_0459at 445.807 kb on - strand, within Dshi_0459at 445.830 kb on - strand, within Dshi_0459at 445.832 kb on + strand, within Dshi_0459at 445.840 kb on - strand, within Dshi_0459at 445.868 kb on - strand, within Dshi_0459at 445.904 kb on - strand, within Dshi_0459at 445.952 kb on + strand, within Dshi_0459at 445.974 kb on - strand, within Dshi_0459at 445.974 kb on - strand, within Dshi_0459at 445.984 kb on - strand, within Dshi_0459at 446.015 kb on + strand, within Dshi_0459at 446.024 kb on - strand, within Dshi_0459at 446.029 kb on + strand, within Dshi_0459at 446.042 kb on - strand, within Dshi_0459at 446.096 kb on + strand, within Dshi_0459at 446.123 kb on + strand, within Dshi_0459at 446.142 kb on + strandat 446.142 kb on + strandat 446.160 kb on + strandat 446.168 kb on - strandat 446.207 kb on + strandat 446.207 kb on + strandat 446.293 kb on + strandat 446.343 kb on - strand, within Dshi_0460at 446.372 kb on + strand, within Dshi_0460at 446.396 kb on - strand, within Dshi_0460at 446.536 kb on + strand, within Dshi_0460at 446.632 kb on - strand, within Dshi_0460at 446.672 kb on + strand, within Dshi_0460at 446.688 kb on + strand, within Dshi_0460at 446.689 kb on + strand, within Dshi_0460at 446.690 kb on - strand, within Dshi_0460at 446.696 kb on - strand, within Dshi_0460at 446.697 kb on + strand, within Dshi_0460at 446.707 kb on - strand, within Dshi_0460at 446.712 kb on - strand, within Dshi_0460at 446.723 kb on - strand, within Dshi_0460at 446.750 kb on + strand, within Dshi_0460at 446.758 kb on - strand, within Dshi_0460at 446.773 kb on - strand, within Dshi_0460at 446.791 kb on + strand, within Dshi_0460at 446.826 kb on - strand, within Dshi_0460at 446.831 kb on - strand, within Dshi_0460at 446.870 kb on + strand, within Dshi_0460at 446.873 kb on - strand, within Dshi_0460at 446.892 kb on + strand, within Dshi_0460at 446.937 kb on + strand, within Dshi_0460at 446.949 kb on + strand, within Dshi_0460at 447.071 kb on - strandat 447.114 kb on + strandat 447.114 kb on + strandat 447.114 kb on + strandat 447.122 kb on - strandat 447.135 kb on - strandat 447.142 kb on + strandat 447.159 kb on - strandat 447.166 kb on + strandat 447.190 kb on - strand, within Dshi_0461at 447.214 kb on + strand, within Dshi_0461at 447.235 kb on + strand, within Dshi_0461at 447.276 kb on - strand, within Dshi_0461at 447.286 kb on - strand, within Dshi_0461at 447.286 kb on - strand, within Dshi_0461at 447.373 kb on + strand, within Dshi_0461at 447.379 kb on - strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.381 kb on + strand, within Dshi_0461at 447.389 kb on - strand, within Dshi_0461at 447.389 kb on - strand, within Dshi_0461at 447.394 kb on - strand, within Dshi_0461at 447.408 kb on + strand, within Dshi_0461at 447.408 kb on + strand, within Dshi_0461at 447.416 kb on - strand, within Dshi_0461at 447.458 kb on - strand, within Dshi_0461at 447.496 kb on + strand, within Dshi_0461at 447.512 kb on + strand, within Dshi_0461at 447.557 kb on + strand, within Dshi_0461at 447.602 kb on - strand, within Dshi_0461at 447.625 kb on - strand, within Dshi_0461at 447.660 kb on - strand, within Dshi_0461at 447.685 kb on + strand, within Dshi_0461at 447.691 kb on - strand, within Dshi_0461at 447.693 kb on - strand, within Dshi_0461at 447.729 kb on - strandat 447.731 kb on - strandat 447.802 kb on - strandat 447.804 kb on - strandat 447.909 kb on + strand, within Dshi_0462at 447.910 kb on - strand, within Dshi_0462at 447.934 kb on - strand, within Dshi_0462at 447.950 kb on - strand, within Dshi_0462at 447.970 kb on + strand, within Dshi_0462at 447.983 kb on - strand, within Dshi_0462at 447.984 kb on - strand, within Dshi_0462at 447.989 kb on - strand, within Dshi_0462at 447.994 kb on - strand, within Dshi_0462at 448.001 kb on + strand, within Dshi_0462at 448.009 kb on - strand, within Dshi_0462at 448.011 kb on + strand, within Dshi_0462at 448.019 kb on - strand, within Dshi_0462at 448.023 kb on + strand, within Dshi_0462at 448.031 kb on - strand, within Dshi_0462at 448.047 kb on - strand, within Dshi_0462at 448.057 kb on - strand, within Dshi_0462at 448.102 kb on + strand, within Dshi_0462at 448.113 kb on + strand, within Dshi_0462

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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445,288 - -1.0
445,293 + +0.4
445,313 - +0.7
445,360 - Dshi_0459 0.10 -0.8
445,371 - Dshi_0459 0.11 -0.2
445,384 + Dshi_0459 0.13 -0.8
445,385 + Dshi_0459 0.13 -0.7
445,422 + Dshi_0459 0.17 -0.6
445,611 + Dshi_0459 0.36 -0.0
445,628 - Dshi_0459 0.38 +0.6
445,629 - Dshi_0459 0.38 -2.3
445,657 + Dshi_0459 0.41 -0.6
445,665 - Dshi_0459 0.42 +0.9
445,667 + Dshi_0459 0.42 -0.2
445,706 - Dshi_0459 0.46 -0.6
445,775 - Dshi_0459 0.53 +0.4
445,799 + Dshi_0459 0.56 +0.0
445,799 + Dshi_0459 0.56 +0.2
445,799 + Dshi_0459 0.56 -0.4
445,805 + Dshi_0459 0.56 -0.1
445,807 - Dshi_0459 0.57 -0.3
445,807 - Dshi_0459 0.57 -1.5
445,830 - Dshi_0459 0.59 +0.0
445,832 + Dshi_0459 0.59 -0.4
445,840 - Dshi_0459 0.60 -1.5
445,868 - Dshi_0459 0.63 -0.3
445,904 - Dshi_0459 0.67 -0.4
445,952 + Dshi_0459 0.72 -0.2
445,974 - Dshi_0459 0.74 -1.7
445,974 - Dshi_0459 0.74 -0.5
445,984 - Dshi_0459 0.75 -0.1
446,015 + Dshi_0459 0.78 +1.2
446,024 - Dshi_0459 0.79 -1.1
446,029 + Dshi_0459 0.80 -0.3
446,042 - Dshi_0459 0.81 +0.1
446,096 + Dshi_0459 0.87 -1.1
446,123 + Dshi_0459 0.90 -1.3
446,142 + +0.3
446,142 + -2.3
446,160 + +0.4
446,168 - -0.2
446,207 + -1.3
446,207 + +1.1
446,293 + +0.7
446,343 - Dshi_0460 0.14 +0.1
446,372 + Dshi_0460 0.17 -1.6
446,396 - Dshi_0460 0.20 -0.8
446,536 + Dshi_0460 0.35 +0.2
446,632 - Dshi_0460 0.46 +1.2
446,672 + Dshi_0460 0.50 -1.0
446,688 + Dshi_0460 0.52 -1.1
446,689 + Dshi_0460 0.52 -0.8
446,690 - Dshi_0460 0.52 -0.3
446,696 - Dshi_0460 0.53 -1.4
446,697 + Dshi_0460 0.53 -0.5
446,707 - Dshi_0460 0.54 +0.6
446,712 - Dshi_0460 0.55 -0.7
446,723 - Dshi_0460 0.56 +0.1
446,750 + Dshi_0460 0.59 -0.8
446,758 - Dshi_0460 0.60 +0.2
446,773 - Dshi_0460 0.61 +0.3
446,791 + Dshi_0460 0.63 -1.6
446,826 - Dshi_0460 0.67 -1.1
446,831 - Dshi_0460 0.68 -1.6
446,870 + Dshi_0460 0.72 -0.6
446,873 - Dshi_0460 0.73 +0.3
446,892 + Dshi_0460 0.75 +0.0
446,937 + Dshi_0460 0.80 +0.5
446,949 + Dshi_0460 0.81 -0.3
447,071 - -0.3
447,114 + -0.2
447,114 + -0.3
447,114 + -0.5
447,122 - +0.1
447,135 - -0.7
447,142 + -0.3
447,159 - -1.9
447,166 + +0.1
447,190 - Dshi_0461 0.11 +0.1
447,214 + Dshi_0461 0.15 -0.3
447,235 + Dshi_0461 0.18 +0.3
447,276 - Dshi_0461 0.24 -0.7
447,286 - Dshi_0461 0.25 -2.4
447,286 - Dshi_0461 0.25 -0.1
447,373 + Dshi_0461 0.38 +0.6
447,379 - Dshi_0461 0.39 +0.1
447,381 + Dshi_0461 0.39 +1.2
447,381 + Dshi_0461 0.39 -1.0
447,381 + Dshi_0461 0.39 +0.1
447,381 + Dshi_0461 0.39 -0.6
447,381 + Dshi_0461 0.39 -1.6
447,389 - Dshi_0461 0.40 -1.5
447,389 - Dshi_0461 0.40 +0.1
447,394 - Dshi_0461 0.41 +1.5
447,408 + Dshi_0461 0.43 -0.4
447,408 + Dshi_0461 0.43 -0.6
447,416 - Dshi_0461 0.44 -0.3
447,458 - Dshi_0461 0.51 +0.4
447,496 + Dshi_0461 0.56 +0.7
447,512 + Dshi_0461 0.59 -1.3
447,557 + Dshi_0461 0.65 -0.9
447,602 - Dshi_0461 0.72 +0.1
447,625 - Dshi_0461 0.75 -1.0
447,660 - Dshi_0461 0.81 +0.3
447,685 + Dshi_0461 0.84 +0.3
447,691 - Dshi_0461 0.85 -0.5
447,693 - Dshi_0461 0.85 -0.1
447,729 - -2.0
447,731 - +1.2
447,802 - -1.5
447,804 - +0.2
447,909 + Dshi_0462 0.10 +0.1
447,910 - Dshi_0462 0.10 -0.2
447,934 - Dshi_0462 0.12 +1.0
447,950 - Dshi_0462 0.14 -0.4
447,970 + Dshi_0462 0.15 +0.3
447,983 - Dshi_0462 0.16 -0.0
447,984 - Dshi_0462 0.16 +1.6
447,989 - Dshi_0462 0.17 +1.2
447,994 - Dshi_0462 0.17 -0.1
448,001 + Dshi_0462 0.18 -0.4
448,009 - Dshi_0462 0.19 +0.4
448,011 + Dshi_0462 0.19 -1.1
448,019 - Dshi_0462 0.19 -1.3
448,023 + Dshi_0462 0.20 +0.2
448,031 - Dshi_0462 0.20 -0.3
448,047 - Dshi_0462 0.22 +1.5
448,057 - Dshi_0462 0.23 -0.1
448,102 + Dshi_0462 0.26 -0.7
448,113 + Dshi_0462 0.27 -0.6

Or see this region's nucleotide sequence