Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0452

Experiment: m.b. Nickel (II) chloride 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0450 and Dshi_0451 are separated by 26 nucleotidesDshi_0451 and Dshi_0452 overlap by 1 nucleotidesDshi_0452 and Dshi_0453 overlap by 4 nucleotidesDshi_0453 and Dshi_0454 overlap by 4 nucleotides Dshi_0450: Dshi_0450 - coenzyme PQQ biosynthesis protein A (RefSeq), at 438,538 to 438,636 _0450 Dshi_0451: Dshi_0451 - coenzyme PQQ biosynthesis protein B (RefSeq), at 438,663 to 439,556 _0451 Dshi_0452: Dshi_0452 - coenzyme PQQ biosynthesis protein C (RefSeq), at 439,556 to 440,308 _0452 Dshi_0453: Dshi_0453 - coenzyme PQQ synthesis D (RefSeq), at 440,305 to 440,583 _0453 Dshi_0454: Dshi_0454 - coenzyme PQQ biosynthesis protein E (RefSeq), at 440,580 to 441,686 _0454 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 438.561 kb on - strand, within Dshi_0450at 438.591 kb on + strand, within Dshi_0450at 438.599 kb on + strand, within Dshi_0450at 438.606 kb on - strand, within Dshi_0450at 438.608 kb on + strand, within Dshi_0450at 438.616 kb on - strand, within Dshi_0450at 438.616 kb on - strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.625 kb on + strand, within Dshi_0450at 438.630 kb on + strandat 438.633 kb on - strandat 438.633 kb on - strandat 438.633 kb on - strandat 438.651 kb on + strandat 438.659 kb on - strandat 438.737 kb on + strandat 438.743 kb on + strandat 438.752 kb on + strandat 438.773 kb on + strand, within Dshi_0451at 438.774 kb on + strand, within Dshi_0451at 438.776 kb on - strand, within Dshi_0451at 438.782 kb on - strand, within Dshi_0451at 438.829 kb on - strand, within Dshi_0451at 438.870 kb on - strand, within Dshi_0451at 438.875 kb on + strand, within Dshi_0451at 438.877 kb on + strand, within Dshi_0451at 438.880 kb on - strand, within Dshi_0451at 438.880 kb on - strand, within Dshi_0451at 438.890 kb on - strand, within Dshi_0451at 438.890 kb on - strand, within Dshi_0451at 438.892 kb on + strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.900 kb on - strand, within Dshi_0451at 438.909 kb on + strand, within Dshi_0451at 438.944 kb on + strand, within Dshi_0451at 438.948 kb on + strand, within Dshi_0451at 438.956 kb on - strand, within Dshi_0451at 438.983 kb on - strand, within Dshi_0451at 439.051 kb on - strand, within Dshi_0451at 439.145 kb on - strand, within Dshi_0451at 439.148 kb on + strand, within Dshi_0451at 439.154 kb on + strand, within Dshi_0451at 439.190 kb on + strand, within Dshi_0451at 439.190 kb on + strand, within Dshi_0451at 439.236 kb on + strand, within Dshi_0451at 439.240 kb on - strand, within Dshi_0451at 439.250 kb on - strand, within Dshi_0451at 439.265 kb on + strand, within Dshi_0451at 439.313 kb on + strand, within Dshi_0451at 439.326 kb on + strand, within Dshi_0451at 439.370 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.425 kb on - strand, within Dshi_0451at 439.505 kb on + strandat 439.526 kb on - strandat 439.539 kb on + strandat 439.550 kb on + strandat 439.567 kb on - strandat 439.618 kb on - strandat 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.670 kb on - strand, within Dshi_0452at 439.680 kb on - strand, within Dshi_0452at 439.681 kb on - strand, within Dshi_0452at 439.708 kb on + strand, within Dshi_0452at 439.733 kb on + strand, within Dshi_0452at 439.755 kb on + strand, within Dshi_0452at 439.755 kb on + strand, within Dshi_0452at 439.763 kb on - strand, within Dshi_0452at 439.763 kb on - strand, within Dshi_0452at 439.771 kb on + strand, within Dshi_0452at 439.846 kb on + strand, within Dshi_0452at 439.927 kb on - strand, within Dshi_0452at 440.048 kb on + strand, within Dshi_0452at 440.109 kb on + strand, within Dshi_0452at 440.117 kb on - strand, within Dshi_0452at 440.126 kb on - strand, within Dshi_0452at 440.301 kb on - strandat 440.324 kb on + strandat 440.332 kb on - strandat 440.375 kb on + strand, within Dshi_0453at 440.416 kb on - strandat 440.464 kb on + strand, within Dshi_0453at 440.478 kb on + strand, within Dshi_0453at 440.481 kb on - strand, within Dshi_0453at 440.481 kb on - strand, within Dshi_0453at 440.621 kb on - strandat 440.626 kb on - strandat 440.658 kb on - strandat 440.675 kb on + strandat 440.706 kb on - strand, within Dshi_0454at 440.721 kb on - strand, within Dshi_0454at 440.822 kb on + strand, within Dshi_0454at 440.854 kb on + strand, within Dshi_0454at 440.914 kb on + strand, within Dshi_0454at 440.980 kb on + strand, within Dshi_0454at 440.999 kb on + strand, within Dshi_0454at 441.021 kb on - strand, within Dshi_0454at 441.033 kb on - strand, within Dshi_0454at 441.036 kb on + strand, within Dshi_0454at 441.052 kb on + strand, within Dshi_0454at 441.052 kb on + strand, within Dshi_0454at 441.055 kb on - strand, within Dshi_0454at 441.060 kb on - strand, within Dshi_0454at 441.123 kb on + strand, within Dshi_0454at 441.180 kb on - strand, within Dshi_0454at 441.224 kb on + strand, within Dshi_0454at 441.229 kb on + strand, within Dshi_0454at 441.277 kb on + strand, within Dshi_0454at 441.287 kb on + strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
remove
438,561 - Dshi_0450 0.23 +1.3
438,591 + Dshi_0450 0.54 -0.0
438,599 + Dshi_0450 0.62 +0.1
438,606 - Dshi_0450 0.69 -1.5
438,608 + Dshi_0450 0.71 +0.2
438,616 - Dshi_0450 0.79 -0.6
438,616 - Dshi_0450 0.79 -0.8
438,625 + Dshi_0450 0.88 -0.1
438,625 + Dshi_0450 0.88 -0.1
438,625 + Dshi_0450 0.88 +0.1
438,625 + Dshi_0450 0.88 -0.0
438,625 + Dshi_0450 0.88 -0.3
438,630 + +0.2
438,633 - -0.2
438,633 - -0.2
438,633 - -0.3
438,651 + -0.1
438,659 - -0.2
438,737 + -0.0
438,743 + +0.1
438,752 + -0.6
438,773 + Dshi_0451 0.12 -0.5
438,774 + Dshi_0451 0.12 -0.5
438,776 - Dshi_0451 0.13 -2.7
438,782 - Dshi_0451 0.13 -0.1
438,829 - Dshi_0451 0.19 -0.6
438,870 - Dshi_0451 0.23 -0.4
438,875 + Dshi_0451 0.24 -0.9
438,877 + Dshi_0451 0.24 +2.0
438,880 - Dshi_0451 0.24 -0.8
438,880 - Dshi_0451 0.24 -0.3
438,890 - Dshi_0451 0.25 -3.5
438,890 - Dshi_0451 0.25 -0.1
438,892 + Dshi_0451 0.26 +1.5
438,900 - Dshi_0451 0.27 +0.1
438,900 - Dshi_0451 0.27 +0.4
438,900 - Dshi_0451 0.27 -0.1
438,909 + Dshi_0451 0.28 -0.1
438,944 + Dshi_0451 0.31 +0.1
438,948 + Dshi_0451 0.32 +0.3
438,956 - Dshi_0451 0.33 -1.5
438,983 - Dshi_0451 0.36 +0.7
439,051 - Dshi_0451 0.43 +1.3
439,145 - Dshi_0451 0.54 -0.3
439,148 + Dshi_0451 0.54 +0.1
439,154 + Dshi_0451 0.55 -0.6
439,190 + Dshi_0451 0.59 -1.8
439,190 + Dshi_0451 0.59 -1.2
439,236 + Dshi_0451 0.64 +1.1
439,240 - Dshi_0451 0.65 -1.7
439,250 - Dshi_0451 0.66 +0.0
439,265 + Dshi_0451 0.67 +0.2
439,313 + Dshi_0451 0.73 -0.7
439,326 + Dshi_0451 0.74 +0.2
439,370 + Dshi_0451 0.79 -1.2
439,393 + Dshi_0451 0.82 -0.4
439,393 + Dshi_0451 0.82 -1.4
439,393 + Dshi_0451 0.82 -0.4
439,393 + Dshi_0451 0.82 -2.0
439,393 + Dshi_0451 0.82 -0.1
439,393 + Dshi_0451 0.82 +1.7
439,425 - Dshi_0451 0.85 -0.3
439,505 + +0.4
439,526 - +0.6
439,539 + -2.6
439,550 + -0.2
439,567 - +1.3
439,618 - -1.4
439,662 + Dshi_0452 0.14 -0.8
439,662 + Dshi_0452 0.14 +0.1
439,662 + Dshi_0452 0.14 -0.4
439,662 + Dshi_0452 0.14 -0.1
439,670 - Dshi_0452 0.15 +1.8
439,680 - Dshi_0452 0.16 -0.4
439,681 - Dshi_0452 0.17 -0.9
439,708 + Dshi_0452 0.20 +0.2
439,733 + Dshi_0452 0.24 -1.5
439,755 + Dshi_0452 0.26 +0.6
439,755 + Dshi_0452 0.26 +0.1
439,763 - Dshi_0452 0.27 -0.3
439,763 - Dshi_0452 0.27 -1.6
439,771 + Dshi_0452 0.29 -0.3
439,846 + Dshi_0452 0.39 -1.0
439,927 - Dshi_0452 0.49 -0.3
440,048 + Dshi_0452 0.65 +0.8
440,109 + Dshi_0452 0.73 -0.7
440,117 - Dshi_0452 0.75 -1.3
440,126 - Dshi_0452 0.76 -0.3
440,301 - +0.1
440,324 + -0.2
440,332 - +1.2
440,375 + Dshi_0453 0.25 -0.0
440,416 - +1.3
440,464 + Dshi_0453 0.57 -0.1
440,478 + Dshi_0453 0.62 +1.6
440,481 - Dshi_0453 0.63 -0.9
440,481 - Dshi_0453 0.63 -0.8
440,621 - -0.2
440,626 - +0.3
440,658 - +0.2
440,675 + -1.2
440,706 - Dshi_0454 0.11 -0.3
440,721 - Dshi_0454 0.13 +1.7
440,822 + Dshi_0454 0.22 +0.7
440,854 + Dshi_0454 0.25 -1.1
440,914 + Dshi_0454 0.30 -0.5
440,980 + Dshi_0454 0.36 -0.7
440,999 + Dshi_0454 0.38 -1.2
441,021 - Dshi_0454 0.40 -0.8
441,033 - Dshi_0454 0.41 +0.1
441,036 + Dshi_0454 0.41 +0.6
441,052 + Dshi_0454 0.43 -1.4
441,052 + Dshi_0454 0.43 -0.5
441,055 - Dshi_0454 0.43 -0.4
441,060 - Dshi_0454 0.43 +0.9
441,123 + Dshi_0454 0.49 +0.3
441,180 - Dshi_0454 0.54 -0.2
441,224 + Dshi_0454 0.58 +0.2
441,229 + Dshi_0454 0.59 +0.3
441,277 + Dshi_0454 0.63 -2.1
441,287 + Dshi_0454 0.64 +1.7
441,295 - Dshi_0454 0.65 -0.3
441,295 - Dshi_0454 0.65 -0.4
441,295 - Dshi_0454 0.65 -0.3

Or see this region's nucleotide sequence