Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0315 and Dshi_0316 overlap by 4 nucleotides Dshi_0316 and Dshi_0317 overlap by 4 nucleotides
Dshi_0315: Dshi_0315 - pseudouridine synthase, RluA family (RefSeq), at 303,518 to 304,564
_0315
Dshi_0316: Dshi_0316 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 304,561 to 305,241
_0316
Dshi_0317: Dshi_0317 - ATP12 ATPase (RefSeq), at 305,238 to 305,942
_0317
Position (kb)
304
305
306 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 303.672 kb on - strand, within Dshi_0315 at 303.837 kb on - strand, within Dshi_0315 at 303.981 kb on - strand, within Dshi_0315 at 304.212 kb on - strand, within Dshi_0315 at 304.500 kb on + strand at 304.508 kb on - strand at 304.513 kb on + strand at 304.676 kb on - strand, within Dshi_0316 at 304.712 kb on - strand, within Dshi_0316 at 304.814 kb on + strand, within Dshi_0316 at 304.898 kb on - strand, within Dshi_0316 at 304.921 kb on + strand, within Dshi_0316 at 305.017 kb on - strand, within Dshi_0316 at 305.025 kb on + strand, within Dshi_0316 at 305.033 kb on - strand, within Dshi_0316 at 305.033 kb on - strand, within Dshi_0316 at 305.111 kb on + strand, within Dshi_0316 at 305.149 kb on - strand, within Dshi_0316 at 305.150 kb on + strand, within Dshi_0316 at 305.176 kb on + strand at 305.936 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 306.024 kb on - strand at 306.034 kb on - strand at 306.046 kb on - strand at 306.075 kb on + strand at 306.075 kb on + strand at 306.123 kb on + strand at 306.140 kb on - strand at 306.152 kb on - strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.217 kb on - strand at 306.220 kb on - strand at 306.221 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 303,672 - Dshi_0315 0.15 -0.2 303,837 - Dshi_0315 0.30 +0.2 303,981 - Dshi_0315 0.44 +1.0 304,212 - Dshi_0315 0.66 -1.7 304,500 + -0.9 304,508 - -0.4 304,513 + -1.1 304,676 - Dshi_0316 0.17 -0.4 304,712 - Dshi_0316 0.22 +0.6 304,814 + Dshi_0316 0.37 -1.5 304,898 - Dshi_0316 0.49 -0.5 304,921 + Dshi_0316 0.53 +0.5 305,017 - Dshi_0316 0.67 +0.5 305,025 + Dshi_0316 0.68 -0.5 305,033 - Dshi_0316 0.69 +0.1 305,033 - Dshi_0316 0.69 +0.2 305,111 + Dshi_0316 0.81 +0.1 305,149 - Dshi_0316 0.86 -0.7 305,150 + Dshi_0316 0.86 -0.0 305,176 + +0.1 305,936 + -0.3 305,948 + +1.1 305,948 + -1.5 305,948 + -0.0 305,948 + +0.7 305,948 + -0.8 305,948 + -1.1 305,948 + -1.4 305,948 + -1.0 305,948 + -1.1 305,948 + -0.4 305,948 + +0.5 305,948 + -0.3 305,948 + -0.6 305,948 + -2.1 305,948 + -1.1 305,948 + -1.2 305,948 + +0.0 305,948 + +0.5 305,948 + -0.4 305,948 + +0.2 305,948 + +0.2 305,948 + -0.1 305,948 + -0.7 305,948 + +0.1 305,948 + -1.1 305,948 + -0.2 305,956 - -0.8 305,956 - -2.0 305,956 - -1.2 305,956 - -0.9 305,956 - -0.4 305,956 - +0.3 305,956 - -0.4 305,956 - -0.5 305,956 - -0.7 305,956 - -0.5 305,956 - -0.8 305,956 - +0.7 305,956 - -0.7 305,956 - -1.4 305,956 - -1.5 305,956 - -0.1 305,956 - -0.4 305,956 - -1.6 305,956 - -0.4 305,956 - +0.2 306,024 - +0.2 306,034 - -1.0 306,046 - -0.0 306,075 + -0.3 306,075 + -1.1 306,123 + -0.7 306,140 - -0.3 306,152 - -0.4 306,200 + +2.0 306,200 + -0.4 306,200 + -1.1 306,200 + +0.2 306,200 + +0.6 306,208 - +1.2 306,208 - -1.2 306,208 - -0.5 306,208 - -0.9 306,208 - +0.6 306,217 - -0.6 306,220 - -2.0 306,221 + -1.6
Or see this region's nucleotide sequence