Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0904 and Dshi_5007 are separated by 192 nucleotides Dshi_5007 and Dshi_0905 are separated by 13 nucleotides Dshi_0905 and Dshi_0906 overlap by 4 nucleotides
Dshi_0904: Dshi_0904 - hypothetical protein (RefSeq), at 927,835 to 928,704
_0904
Dshi_5007: Dshi_5007 - hypothetical protein (RefSeq), at 928,897 to 929,556
_5007
Dshi_0905: Dshi_0905 - protein of unknown function UPF0126 (RefSeq), at 929,570 to 930,199
_0905
Dshi_0906: Dshi_0906 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 930,196 to 930,930
_0906
Position (kb) 928
929
930 Strain fitness (log2 ratio) -1
0
1
2 at 927.935 kb on - strand, within Dshi_0904 at 927.991 kb on - strand, within Dshi_0904 at 928.025 kb on - strand, within Dshi_0904 at 928.073 kb on - strand, within Dshi_0904 at 928.094 kb on + strand, within Dshi_0904 at 928.102 kb on - strand, within Dshi_0904 at 928.130 kb on + strand, within Dshi_0904 at 928.134 kb on + strand, within Dshi_0904 at 928.173 kb on + strand, within Dshi_0904 at 928.236 kb on - strand, within Dshi_0904 at 928.332 kb on + strand, within Dshi_0904 at 928.487 kb on + strand, within Dshi_0904 at 928.533 kb on - strand, within Dshi_0904 at 928.559 kb on + strand, within Dshi_0904 at 928.629 kb on + strand at 928.679 kb on + strand at 928.686 kb on - strand at 928.686 kb on - strand at 928.711 kb on + strand at 928.757 kb on + strand at 928.793 kb on - strand at 928.818 kb on + strand at 929.245 kb on - strand, within Dshi_5007 at 929.383 kb on - strand, within Dshi_5007 at 929.550 kb on + strand at 929.580 kb on + strand at 929.679 kb on + strand, within Dshi_0905 at 929.684 kb on + strand, within Dshi_0905 at 930.151 kb on + strand at 930.151 kb on + strand at 930.159 kb on - strand at 930.252 kb on + strand at 930.299 kb on + strand, within Dshi_0906 at 930.350 kb on - strand, within Dshi_0906 at 930.374 kb on + strand, within Dshi_0906 at 930.474 kb on + strand, within Dshi_0906
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 927,935 - Dshi_0904 0.11 +0.3 927,991 - Dshi_0904 0.18 +0.9 928,025 - Dshi_0904 0.22 +1.8 928,073 - Dshi_0904 0.27 +1.1 928,094 + Dshi_0904 0.30 +0.5 928,102 - Dshi_0904 0.31 +2.0 928,130 + Dshi_0904 0.34 +0.5 928,134 + Dshi_0904 0.34 +0.1 928,173 + Dshi_0904 0.39 +0.2 928,236 - Dshi_0904 0.46 +1.0 928,332 + Dshi_0904 0.57 +1.3 928,487 + Dshi_0904 0.75 +1.5 928,533 - Dshi_0904 0.80 +0.2 928,559 + Dshi_0904 0.83 -0.3 928,629 + +1.5 928,679 + -0.3 928,686 - -1.2 928,686 - +1.9 928,711 + +0.7 928,757 + +0.4 928,793 - +1.2 928,818 + +0.6 929,245 - Dshi_5007 0.53 +1.0 929,383 - Dshi_5007 0.74 +2.0 929,550 + +1.7 929,580 + -1.4 929,679 + Dshi_0905 0.17 +1.4 929,684 + Dshi_0905 0.18 +0.7 930,151 + +1.1 930,151 + +1.3 930,159 - -0.7 930,252 + +0.3 930,299 + Dshi_0906 0.14 -1.1 930,350 - Dshi_0906 0.21 +0.9 930,374 + Dshi_0906 0.24 +0.3 930,474 + Dshi_0906 0.38 -0.8
Or see this region's nucleotide sequence